Wall clock time and date at job start Thu Apr 9 2020 14:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36884 * 126.39867 * 2 1 4 4 C 1.34668 * 106.82052 * 179.84203 * 3 2 1 5 5 C 1.50700 * 125.99250 * 180.19086 * 4 3 2 6 6 C 1.50697 * 109.47118 * 125.29303 * 5 4 3 7 7 H 1.07994 * 120.00520 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99334 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00453 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99392 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47295 * 60.00150 * 10 8 6 12 12 H 1.48502 * 109.46599 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47084 * 300.00126 * 10 8 6 14 14 N 1.34129 * 108.01593 * 0.41436 * 4 3 2 15 15 C 1.30492 * 109.26061 * 359.73617 * 14 4 3 16 16 C 1.50703 * 125.65293 * 179.97438 * 15 14 4 17 17 C 1.52996 * 117.49658 * 8.66484 * 16 15 14 18 18 C 1.52997 * 60.00024 * 252.50639 * 17 16 15 19 19 H 1.09002 * 109.47391 * 269.69436 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.69492 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.69619 * 1 2 3 22 22 H 1.08000 * 126.59052 * 359.97174 * 3 2 1 23 23 H 1.09003 * 109.46749 * 245.29323 * 5 4 3 24 24 H 1.09000 * 109.46845 * 5.28841 * 5 4 3 25 25 H 0.97004 * 119.99977 * 180.02562 * 9 8 6 26 26 H 1.09006 * 115.55072 * 154.36941 * 16 15 14 27 27 H 1.09001 * 117.49993 * 0.02562 * 17 16 15 28 28 H 1.09004 * 117.49841 * 145.01987 * 17 16 15 29 29 H 1.08997 * 117.50292 * 252.51071 * 18 17 16 30 30 H 1.09005 * 117.51232 * 107.47925 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 0.0036 5 6 4.7891 1.5026 0.0090 6 6 5.6636 1.1078 1.1710 7 1 5.3510 0.3185 1.8385 8 6 6.8636 1.7536 1.3812 9 7 7.2447 2.7143 0.5680 10 14 7.9474 1.2647 2.8220 11 1 8.3273 -0.1651 2.6929 12 1 9.1723 2.1043 2.8271 13 1 7.2040 1.4667 4.0915 14 7 3.5095 -0.6902 -0.0036 15 6 2.2664 -1.0870 -0.0057 16 6 1.8019 -2.5206 -0.0139 17 6 2.8605 -3.6073 0.1843 18 6 2.2303 -3.3954 -1.1937 19 1 -0.3634 -0.0055 1.0276 20 1 -0.3633 -0.8873 -0.5186 21 1 -0.3633 0.8927 -0.5091 22 1 1.9613 2.1345 -0.0004 23 1 5.3347 1.3551 -0.9231 24 1 4.5098 2.5519 0.1043 25 1 8.0891 3.1684 0.7157 26 1 0.8135 -2.6970 0.4106 27 1 3.8928 -3.2853 0.3209 28 1 2.5687 -4.4989 0.7393 29 1 1.5240 -4.1474 -1.5452 30 1 2.8479 -2.9338 -1.9643 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261187327.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:03 Heat of formation + Delta-G solvation = 57.575382 kcal Electronic energy + Delta-G solvation = -12929.965449 eV Core-core repulsion = 10726.083615 eV Total energy + Delta-G solvation = -2203.881834 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.89464 -37.84186 -35.73086 -34.53222 -31.72977 -29.28732 -27.40938 -25.44873 -23.59414 -23.20812 -21.18010 -20.18653 -18.42123 -17.70458 -16.59702 -16.46511 -16.18247 -15.39703 -14.66499 -14.40774 -14.16773 -13.81126 -13.41717 -13.32455 -12.79831 -12.64169 -12.58272 -12.34189 -11.83248 -11.64624 -11.44010 -11.35642 -10.67744 -10.50802 -10.22435 -8.94511 -8.16343 -6.26232 1.16716 1.36978 1.41708 1.49860 2.02468 2.23579 2.46157 3.07792 3.14766 3.51168 3.85512 4.00518 4.09780 4.18482 4.30263 4.47773 4.69499 4.70737 4.82068 4.85621 4.97641 5.17795 5.29584 5.36869 5.44842 5.59312 5.77595 5.96246 6.30105 6.51688 6.82811 7.39345 7.45274 8.93718 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.036349 B = 0.008526 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.126951 B = 3283.311226 C = 3751.279314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C -0.076 4.076 4 C 0.003 3.997 5 C 0.102 3.898 6 C -0.516 4.516 7 H 0.043 0.957 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.274 1.274 12 H -0.274 1.274 13 H -0.268 1.268 14 N -0.525 5.525 15 C 0.214 3.786 16 C -0.088 4.088 17 C -0.160 4.160 18 C -0.146 4.146 19 H 0.086 0.914 20 H 0.107 0.893 21 H 0.099 0.901 22 H 0.191 0.809 23 H -0.007 1.007 24 H 0.017 0.983 25 H 0.265 0.735 26 H 0.154 0.846 27 H 0.070 0.930 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 -9.665 -1.080 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.207 4.207 4 C -0.125 4.125 5 C 0.065 3.935 6 C -0.554 4.554 7 H 0.061 0.939 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.199 1.199 13 H -0.193 1.193 14 N -0.245 5.245 15 C -0.048 4.048 16 C -0.107 4.107 17 C -0.198 4.198 18 C -0.184 4.184 19 H 0.105 0.895 20 H 0.126 0.874 21 H 0.118 0.882 22 H 0.208 0.792 23 H 0.011 0.989 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.171 0.829 27 H 0.089 0.911 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.989 -10.000 -1.110 18.891 hybrid contribution 0.405 0.931 0.540 1.150 sum -15.584 -9.069 -0.569 18.040 Atomic orbital electron populations 1.22341 0.73946 1.06265 1.04701 1.45270 1.08826 1.05057 1.55205 1.22612 0.90212 0.93451 1.14440 1.21235 0.95424 0.90698 1.05147 1.17296 0.88599 0.92246 0.95404 1.21263 1.04325 1.18165 1.11649 0.93890 1.25911 0.99077 0.95024 0.99649 1.70063 1.23027 1.24956 1.39311 0.85498 0.77953 0.78261 0.79275 1.19910 1.19927 1.19311 1.69954 1.20371 1.12707 1.21517 1.22962 0.85300 0.91216 1.05361 1.20335 1.00997 0.82261 1.07136 1.22975 0.97444 0.98978 1.00368 1.23053 1.03301 1.01250 0.90818 0.89504 0.87401 0.88232 0.79183 0.98901 0.96517 0.92606 0.82877 0.91106 0.85141 0.84353 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.91 127.77 1.39 2.59 16 2 N -0.46 -14.93 3.15 -537.60 -1.69 -16.63 16 3 C -0.08 -3.04 11.46 83.09 0.95 -2.09 16 4 C 0.00 0.17 6.30 41.39 0.26 0.43 16 5 C 0.10 6.12 5.54 29.10 0.16 6.28 16 6 C -0.52 -32.74 9.08 25.60 0.23 -32.51 16 7 H 0.04 2.78 7.74 -2.91 -0.02 2.76 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.93 -59.45 13.29 21.45 0.28 -59.17 16 10 Si 0.97 47.80 29.54 68.60 2.03 49.83 16 11 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 14 N -0.53 -25.89 10.78 -176.28 -1.90 -27.79 16 15 C 0.21 7.98 7.44 138.13 1.03 9.00 16 16 C -0.09 -2.25 5.71 -11.54 -0.07 -2.32 16 17 C -0.16 -4.14 10.13 30.59 0.31 -3.83 16 18 C -0.15 -3.31 10.23 30.59 0.31 -3.00 16 19 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.11 1.33 7.68 -2.39 -0.02 1.31 16 21 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 22 H 0.19 6.44 8.06 -2.91 -0.02 6.42 16 23 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 24 H 0.02 1.00 8.11 -2.39 -0.02 0.98 16 25 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 26 H 0.15 2.63 7.93 -2.38 -0.02 2.61 16 27 H 0.07 2.46 7.88 -2.39 -0.02 2.44 16 28 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -80.40 264.90 4.88 -75.52 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.11 Total: 3.17 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 5.05 Total: -24.94 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.31 Total: -103.58 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -80.40 4.88 -75.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261187327.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.095 kcal (2) G-P(sol) polarization free energy of solvation -80.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds