Wall clock time and date at job start Thu Apr 9 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40300 * 126.09002 * 2 1 4 4 C 1.31071 * 108.26859 * 179.91377 * 3 2 1 5 5 C 1.39297 * 108.07944 * 0.02562 * 4 3 2 6 6 C 1.34326 * 126.09559 * 179.97438 * 2 1 3 7 7 C 1.50824 * 128.02739 * 0.22302 * 6 2 1 8 8 H 1.08997 * 109.68408 * 283.08420 * 7 6 2 9 9 C 1.50704 * 109.68377 * 43.59943 * 7 6 2 10 10 H 1.08006 * 119.99713 * 35.00850 * 9 7 6 11 11 C 1.37880 * 120.00163 * 215.00016 * 9 7 6 12 12 N 1.31517 * 119.99666 * 184.88792 * 11 9 7 13 13 Si 1.86788 * 119.99872 * 4.89183 * 11 9 7 14 14 H 1.48503 * 109.47329 * 84.78538 * 13 11 9 15 15 H 1.48507 * 109.46943 * 204.78430 * 13 11 9 16 16 H 1.48503 * 109.47651 * 324.78550 * 13 11 9 17 17 C 1.53362 * 108.37717 * 163.36201 * 7 6 2 18 18 C 1.53107 * 109.50459 * 49.94551 * 17 7 6 19 19 C 1.50843 * 127.90064 * 180.32232 * 5 4 3 20 20 H 1.08990 * 109.47217 * 264.39222 * 1 2 3 21 21 H 1.08997 * 109.46757 * 24.39081 * 1 2 3 22 22 H 1.08996 * 109.46837 * 144.38905 * 1 2 3 23 23 H 1.07999 * 125.96552 * 180.02562 * 4 3 2 24 24 H 0.96993 * 119.99757 * 179.97438 * 12 11 9 25 25 H 1.09004 * 109.46737 * 169.95982 * 17 7 6 26 26 H 1.09000 * 109.46653 * 289.93442 * 17 7 6 27 27 H 1.09006 * 109.46334 * 49.72610 * 18 17 7 28 28 H 1.09003 * 109.46531 * 169.69944 * 18 17 7 29 29 H 1.09000 * 109.68065 * 282.92835 * 19 5 4 30 30 H 1.09001 * 109.68065 * 43.47739 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1338 0.0000 4 6 3.5393 0.7326 0.0019 5 6 3.5455 -0.6604 0.0025 6 6 2.2564 -1.0854 0.0005 7 6 1.8438 -2.5361 -0.0035 8 1 1.5167 -2.8275 0.9946 9 6 0.7196 -2.7414 -0.9860 10 1 0.6921 -2.1702 -1.9022 11 6 -0.2737 -3.6586 -0.7153 12 7 -1.2013 -3.9076 -1.6137 13 14 -0.3020 -4.5471 0.9275 14 1 -0.9962 -3.7045 1.9342 15 1 -1.0226 -5.8372 0.7801 16 1 1.0904 -4.8061 1.3744 17 6 3.0541 -3.3819 -0.4180 18 6 4.2696 -2.9811 0.4223 19 6 4.7399 -1.5816 0.0113 20 1 -0.3633 -0.1004 1.0226 21 1 -0.3633 0.9359 -0.4244 22 1 -0.3633 -0.8355 -0.5984 23 1 4.4106 1.3707 0.0028 24 1 -1.8998 -4.5531 -1.4235 25 1 2.8325 -4.4369 -0.2563 26 1 3.2704 -3.2139 -1.4730 27 1 3.9956 -2.9746 1.4773 28 1 5.0750 -3.6977 0.2608 29 1 5.1778 -1.6244 -0.9860 30 1 5.4805 -1.2158 0.7225 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:11 Heat of formation + Delta-G solvation = 40.594757 kcal Electronic energy + Delta-G solvation = -13741.225377 eV Core-core repulsion = 11536.607208 eV Total energy + Delta-G solvation = -2204.618169 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.24442 -37.53603 -35.31939 -33.85585 -31.38201 -30.16915 -28.01665 -26.11867 -23.40683 -22.54227 -21.48497 -19.57938 -18.98045 -17.49365 -16.38218 -15.94656 -15.41344 -14.94598 -14.62748 -14.49847 -14.24142 -14.07140 -13.66562 -13.12500 -12.96358 -12.91345 -12.56538 -12.05372 -11.89615 -11.54578 -11.33981 -11.25735 -11.05723 -10.74229 -9.97581 -8.93835 -8.32888 -6.36849 1.15305 1.33716 1.37732 1.46751 1.85026 2.03897 2.31232 3.00648 3.87707 4.01165 4.27197 4.29688 4.40595 4.44764 4.52291 4.70239 4.79258 4.85748 4.97187 5.02455 5.07829 5.22546 5.32008 5.45451 5.55142 5.67530 5.71925 6.01471 6.20744 6.35017 6.64577 6.99578 7.26150 8.82503 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.014658 C = 0.011449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.230404 B = 1909.821973 C = 2445.140564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.370 5.370 3 N -0.352 5.352 4 C 0.047 3.953 5 C -0.279 4.279 6 C 0.104 3.896 7 C 0.068 3.932 8 H 0.048 0.952 9 C -0.507 4.507 10 H 0.030 0.970 11 C 0.030 3.970 12 N -0.937 5.937 13 Si 0.928 3.072 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.242 1.242 17 C -0.104 4.104 18 C -0.117 4.117 19 C -0.026 4.026 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.212 0.788 24 H 0.269 0.731 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 2.621 6.288 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.149 5.149 3 N -0.174 5.174 4 C -0.136 4.136 5 C -0.291 4.291 6 C -0.026 4.026 7 C 0.048 3.952 8 H 0.066 0.934 9 C -0.545 4.545 10 H 0.048 0.952 11 C -0.170 4.170 12 N -0.576 5.576 13 Si 0.752 3.248 14 H -0.192 1.192 15 H -0.212 1.212 16 H -0.165 1.165 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.064 4.064 20 H 0.092 0.908 21 H 0.106 0.894 22 H 0.113 0.887 23 H 0.229 0.771 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.001 3.560 6.241 10.753 hybrid contribution -0.376 -1.040 0.169 1.118 sum 7.625 2.520 6.410 10.275 Atomic orbital electron populations 1.22100 0.74121 1.04961 1.03568 1.48254 1.07033 1.03492 1.56143 1.77284 1.02509 1.09102 1.28501 1.24001 0.95409 0.94802 0.99406 1.20329 0.94697 0.94410 1.19628 1.21715 0.91170 0.91811 0.97880 1.18085 0.95041 0.85614 0.96475 0.93420 1.20771 1.07038 1.22229 1.04456 0.95208 1.25747 0.94609 0.96638 0.99962 1.70023 1.15782 1.35476 1.36288 0.86012 0.79987 0.78407 0.80425 1.19184 1.21227 1.16493 1.21706 0.94393 0.98637 0.99488 1.21650 0.97458 0.97118 0.99257 1.19922 0.92976 0.91888 1.01650 0.90789 0.89351 0.88663 0.77121 0.92216 0.92623 0.93419 0.92514 0.89610 0.91400 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.75 11.13 127.77 1.42 5.18 16 2 N -0.37 -16.11 4.00 -356.03 -1.43 -17.54 16 3 N -0.35 -14.36 12.59 -57.28 -0.72 -15.08 16 4 C 0.05 1.65 12.00 85.06 1.02 2.67 16 5 C -0.28 -10.36 5.92 -20.14 -0.12 -10.48 16 6 C 0.10 4.55 6.20 41.64 0.26 4.81 16 7 C 0.07 3.07 2.05 -12.12 -0.02 3.05 16 8 H 0.05 2.14 5.28 -2.39 -0.01 2.13 16 9 C -0.51 -26.98 6.15 25.60 0.16 -26.82 16 10 H 0.03 1.82 7.92 -2.91 -0.02 1.80 16 11 C 0.03 1.59 5.47 84.65 0.46 2.05 16 12 N -0.94 -54.71 13.96 21.45 0.30 -54.41 16 13 Si 0.93 40.86 26.99 68.60 1.85 42.71 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 15 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.24 -9.80 6.81 99.48 0.68 -9.12 16 17 C -0.10 -4.05 5.20 30.75 0.16 -3.89 16 18 C -0.12 -3.54 5.89 30.72 0.18 -3.36 16 19 C -0.03 -0.76 6.28 29.98 0.19 -0.57 16 20 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 21 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 22 H 0.10 4.41 5.42 -2.39 -0.01 4.40 16 23 H 0.21 5.27 8.06 -2.91 -0.02 5.24 16 24 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.05 1.96 8.08 -2.39 -0.02 1.95 16 27 H 0.06 1.70 8.11 -2.38 -0.02 1.68 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -63.14 244.90 4.81 -58.34 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.09 Total: 13.34 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.71 Total: -27.37 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -1.85 Total: -87.02 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.85 Total: 42.71 kcal Total: -63.14 4.81 -58.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.932 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds