Wall clock time and date at job start Thu Apr 9 2020 14:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40307 * 126.08855 * 2 1 4 4 C 1.31063 * 108.26384 * 180.02562 * 3 2 1 5 5 C 1.39290 * 108.08607 * 359.97438 * 4 3 2 6 6 C 1.34322 * 126.09391 * 180.02562 * 2 1 3 7 7 C 1.50820 * 128.03574 * 359.89514 * 6 2 1 8 8 H 1.09004 * 109.68195 * 76.83449 * 7 6 2 9 9 C 1.50702 * 109.68132 * 316.31840 * 7 6 2 10 10 H 1.08002 * 120.00299 * 0.52138 * 9 7 6 11 11 C 1.37884 * 119.99942 * 180.23696 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.53362 * 108.41967 * 196.57660 * 7 6 2 18 18 C 1.53127 * 109.50188 * 310.12608 * 17 7 6 19 19 C 1.50843 * 127.90266 * 179.91008 * 5 4 3 20 20 H 1.09001 * 109.46844 * 269.99746 * 1 2 3 21 21 H 1.08996 * 109.47118 * 29.99913 * 1 2 3 22 22 H 1.09003 * 109.46882 * 150.00069 * 1 2 3 23 23 H 1.08004 * 125.95653 * 179.97438 * 4 3 2 24 24 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 25 25 H 1.09008 * 109.46403 * 70.09426 * 17 7 6 26 26 H 1.08990 * 109.46905 * 190.07263 * 17 7 6 27 27 H 1.09003 * 109.43873 * 310.19622 * 18 17 7 28 28 H 1.08999 * 109.45177 * 190.23832 * 18 17 7 29 29 H 1.09003 * 109.67739 * 316.37104 * 19 5 4 30 30 H 1.09000 * 109.68485 * 76.92621 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1338 0.0000 4 6 3.5392 0.7326 -0.0006 5 6 3.5456 -0.6602 -0.0003 6 6 2.2563 -1.0854 -0.0005 7 6 1.8439 -2.5361 0.0010 8 1 1.5172 -2.8259 -0.9977 9 6 0.7195 -2.7431 0.9829 10 1 0.3329 -1.9061 1.5455 11 6 0.1803 -3.9999 1.1586 12 7 0.6510 -5.0190 0.4735 13 14 -1.2186 -4.2549 2.3699 14 1 -1.5628 -2.9593 3.0086 15 1 -2.4060 -4.7828 1.6509 16 1 -0.7996 -5.2255 3.4129 17 6 3.0534 -3.3833 0.4149 18 6 4.2703 -2.9805 -0.4227 19 6 4.7400 -1.5815 -0.0026 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 4.4105 1.3708 -0.0011 24 1 0.2719 -5.9033 0.5974 25 1 3.2688 -3.2176 1.4706 26 1 2.8316 -4.4377 0.2508 27 1 3.9977 -2.9725 -1.4781 28 1 5.0755 -3.6972 -0.2611 29 1 5.4829 -1.2175 -0.7124 30 1 5.1746 -1.6217 0.9962 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261216818.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:13 Heat of formation + Delta-G solvation = 57.592273 kcal Electronic energy + Delta-G solvation = -13694.107159 eV Core-core repulsion = 11490.226057 eV Total energy + Delta-G solvation = -2203.881102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60421 -35.74393 -33.54035 -31.99790 -29.23282 -28.37376 -26.28679 -24.43165 -21.83479 -20.82600 -19.94837 -17.64804 -16.66458 -15.65388 -14.53715 -14.49643 -13.80424 -13.32117 -12.86018 -12.51360 -12.49144 -12.29174 -11.98816 -11.53509 -11.14332 -11.02327 -10.80108 -10.50422 -10.08541 -9.77298 -9.67623 -9.41692 -9.06758 -8.54612 -8.28134 -7.30957 -6.15507 -4.22902 2.81453 3.20087 3.29392 3.32100 3.40343 3.61978 4.31375 5.15574 5.33831 5.69590 5.82231 5.87958 5.95196 5.96682 6.18937 6.22489 6.46436 6.54296 6.59904 6.70196 6.75975 7.02569 7.06037 7.34136 7.49167 7.59523 7.76359 7.89432 8.00214 8.19211 8.58831 8.78476 9.42380 10.90579 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033853 B = 0.013382 C = 0.010208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.902148 B = 2091.873911 C = 2742.221504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.364 5.364 3 N -0.336 5.336 4 C 0.044 3.956 5 C -0.281 4.281 6 C 0.144 3.856 7 C 0.102 3.898 8 H 0.046 0.954 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.883 5.883 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.028 4.028 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.098 0.902 23 H 0.169 0.831 24 H 0.263 0.737 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 4.271 -1.213 5.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.144 5.144 3 N -0.158 5.158 4 C -0.140 4.140 5 C -0.292 4.292 6 C 0.014 3.986 7 C 0.082 3.918 8 H 0.064 0.936 9 C -0.560 4.560 10 H 0.077 0.923 11 C -0.134 4.134 12 N -0.521 5.521 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.137 4.137 18 C -0.160 4.160 19 C -0.067 4.067 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.116 0.884 23 H 0.186 0.814 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.019 5.119 -1.242 5.641 hybrid contribution -0.247 -0.805 0.752 1.129 sum 1.772 4.315 -0.489 4.690 Atomic orbital electron populations 1.21799 0.74787 1.03330 1.02942 1.48045 1.06289 1.03528 1.56490 1.77280 1.01426 1.08892 1.28228 1.23314 0.94929 0.94653 1.01087 1.19839 0.94764 0.93235 1.21337 1.21947 0.89823 0.92446 0.94413 1.17729 0.94383 0.81657 0.98015 0.93631 1.21096 1.16902 0.94505 1.23501 0.92256 1.24925 0.96869 0.95916 0.95735 1.69908 1.41512 1.00059 1.40620 0.86528 0.82003 0.78363 0.81124 1.19764 1.20871 1.20835 1.21584 0.92062 1.02420 0.97592 1.21741 0.98855 0.95183 1.00249 1.19851 0.93545 0.93569 0.99703 0.91397 0.91328 0.88396 0.81410 0.92736 0.93780 0.89213 0.92925 0.93311 0.92955 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.08 9.79 59.85 0.59 2.67 16 2 N -0.36 -7.91 4.00 -63.88 -0.26 -8.17 16 3 N -0.34 -7.14 12.59 30.54 0.38 -6.76 16 4 C 0.04 0.86 12.00 -17.49 -0.21 0.65 16 5 C -0.28 -5.84 5.91 -105.05 -0.62 -6.46 16 6 C 0.14 3.27 6.17 -82.33 -0.51 2.77 16 7 C 0.10 2.47 2.25 -92.68 -0.21 2.26 16 8 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 9 C -0.52 -13.39 7.16 -34.44 -0.25 -13.64 16 10 H 0.06 1.52 6.07 -52.49 -0.32 1.21 16 11 C 0.07 1.77 5.31 -17.82 -0.09 1.68 16 12 N -0.88 -23.66 11.52 55.43 0.64 -23.02 16 13 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.10 -2.24 4.83 -26.48 -0.13 -2.37 16 18 C -0.12 -2.34 5.90 -26.44 -0.16 -2.50 16 19 C -0.03 -0.51 6.28 -27.58 -0.17 -0.68 16 20 H 0.07 1.22 7.54 -51.93 -0.39 0.83 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.10 1.83 7.27 -51.93 -0.38 1.45 16 23 H 0.17 2.58 8.06 -52.48 -0.42 2.16 16 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.04 1.04 8.08 -51.92 -0.42 0.62 16 26 H 0.09 2.22 6.49 -51.93 -0.34 1.89 16 27 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 245.23 15.07 3.70 3.70 Total: -1.00 -28.29 245.23 -6.25 -34.55 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.94 Total: 0.16 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.76 Total: -15.62 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.77 Total: -37.95 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.29 -6.25 -34.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216818.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.141 kcal (2) G-P(sol) polarization free energy of solvation -28.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds