Wall clock time and date at job start Thu Apr 9 2020 14:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40307 * 126.08855 * 2 1 4 4 C 1.31063 * 108.26384 * 180.02562 * 3 2 1 5 5 C 1.39290 * 108.08607 * 359.97438 * 4 3 2 6 6 C 1.34322 * 126.09391 * 180.02562 * 2 1 3 7 7 C 1.50820 * 128.03574 * 359.89514 * 6 2 1 8 8 H 1.09004 * 109.68195 * 76.83449 * 7 6 2 9 9 C 1.50702 * 109.68132 * 316.31840 * 7 6 2 10 10 H 1.08002 * 120.00299 * 0.52138 * 9 7 6 11 11 C 1.37884 * 119.99942 * 180.23696 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.53362 * 108.41967 * 196.57660 * 7 6 2 18 18 C 1.53127 * 109.50188 * 310.12608 * 17 7 6 19 19 C 1.50843 * 127.90266 * 179.91008 * 5 4 3 20 20 H 1.09001 * 109.46844 * 269.99746 * 1 2 3 21 21 H 1.08996 * 109.47118 * 29.99913 * 1 2 3 22 22 H 1.09003 * 109.46882 * 150.00069 * 1 2 3 23 23 H 1.08004 * 125.95653 * 179.97438 * 4 3 2 24 24 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 25 25 H 1.09008 * 109.46403 * 70.09426 * 17 7 6 26 26 H 1.08990 * 109.46905 * 190.07263 * 17 7 6 27 27 H 1.09003 * 109.43873 * 310.19622 * 18 17 7 28 28 H 1.08999 * 109.45177 * 190.23832 * 18 17 7 29 29 H 1.09003 * 109.67739 * 316.37104 * 19 5 4 30 30 H 1.09000 * 109.68485 * 76.92621 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1338 0.0000 4 6 3.5392 0.7326 -0.0006 5 6 3.5456 -0.6602 -0.0003 6 6 2.2563 -1.0854 -0.0005 7 6 1.8439 -2.5361 0.0010 8 1 1.5172 -2.8259 -0.9977 9 6 0.7195 -2.7431 0.9829 10 1 0.3329 -1.9061 1.5455 11 6 0.1803 -3.9999 1.1586 12 7 0.6510 -5.0190 0.4735 13 14 -1.2186 -4.2549 2.3699 14 1 -1.5628 -2.9593 3.0086 15 1 -2.4060 -4.7828 1.6509 16 1 -0.7996 -5.2255 3.4129 17 6 3.0534 -3.3833 0.4149 18 6 4.2703 -2.9805 -0.4227 19 6 4.7400 -1.5815 -0.0026 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 4.4105 1.3708 -0.0011 24 1 0.2719 -5.9033 0.5974 25 1 3.2688 -3.2176 1.4706 26 1 2.8316 -4.4377 0.2508 27 1 3.9977 -2.9725 -1.4781 28 1 5.0755 -3.6972 -0.2611 29 1 5.4829 -1.2175 -0.7124 30 1 5.1746 -1.6217 0.9962 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216818.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:13 Heat of formation + Delta-G solvation = 41.395038 kcal Electronic energy + Delta-G solvation = -13694.809524 eV Core-core repulsion = 11490.226057 eV Total energy + Delta-G solvation = -2204.583467 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.21209 -37.45472 -35.25351 -33.76803 -30.93106 -30.03319 -27.96728 -26.18946 -23.56631 -22.48511 -21.51417 -19.31614 -18.59328 -17.35881 -16.36242 -16.15343 -15.35947 -14.84304 -14.56095 -14.22455 -14.08639 -14.00990 -13.56144 -13.06154 -12.90970 -12.78760 -12.52998 -12.26002 -11.91869 -11.44594 -11.30108 -11.17175 -10.92504 -10.48106 -9.95385 -8.92584 -8.13800 -6.27418 1.16536 1.39221 1.43216 1.52202 1.86111 2.05090 2.41229 3.14936 3.86710 4.11376 4.33246 4.41180 4.43745 4.46631 4.60134 4.73704 4.91231 4.95851 5.05974 5.08216 5.12591 5.32484 5.45682 5.59025 5.69198 5.86863 5.96612 6.04517 6.23386 6.36590 6.76710 7.00107 7.40301 8.91399 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033853 B = 0.013382 C = 0.010208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.902148 B = 2091.873911 C = 2742.221504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.376 5.376 3 N -0.349 5.349 4 C 0.050 3.950 5 C -0.283 4.283 6 C 0.109 3.891 7 C 0.104 3.896 8 H 0.015 0.985 9 C -0.530 4.530 10 H 0.054 0.946 11 C 0.025 3.975 12 N -0.909 5.909 13 Si 0.951 3.049 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.282 1.282 17 C -0.091 4.091 18 C -0.116 4.116 19 C -0.025 4.025 20 H 0.067 0.933 21 H 0.096 0.904 22 H 0.086 0.914 23 H 0.212 0.788 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 5.348 -0.912 6.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.156 5.156 3 N -0.171 5.171 4 C -0.134 4.134 5 C -0.295 4.295 6 C -0.021 4.021 7 C 0.085 3.915 8 H 0.033 0.967 9 C -0.568 4.568 10 H 0.072 0.928 11 C -0.175 4.175 12 N -0.548 5.548 13 Si 0.777 3.223 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.208 1.208 17 C -0.130 4.130 18 C -0.154 4.154 19 C -0.063 4.063 20 H 0.086 0.914 21 H 0.114 0.886 22 H 0.105 0.895 23 H 0.228 0.772 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.992 6.201 -0.943 6.950 hybrid contribution -0.534 -1.106 0.636 1.382 sum 2.458 5.096 -0.308 5.666 Atomic orbital electron populations 1.21882 0.73805 1.04149 1.03176 1.48307 1.07175 1.03402 1.56726 1.77247 1.02332 1.08914 1.28600 1.23973 0.95533 0.94559 0.99342 1.20300 0.94797 0.94455 1.19917 1.21874 0.91292 0.91964 0.96938 1.17533 0.94616 0.83447 0.95952 0.96746 1.21299 1.17510 0.94428 1.23594 0.92752 1.25603 0.98965 0.95724 0.97234 1.70020 1.42611 1.00343 1.41810 0.85610 0.79455 0.78166 0.79080 1.19377 1.20336 1.20842 1.21410 0.93533 1.00698 0.97347 1.21668 0.97737 0.96911 0.99074 1.19927 0.93150 0.91913 1.01290 0.91401 0.88584 0.89514 0.77153 0.92699 0.95238 0.91750 0.93361 0.90816 0.89590 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.07 9.79 127.77 1.25 5.32 16 2 N -0.38 -16.12 4.00 -356.01 -1.42 -17.54 16 3 N -0.35 -14.13 12.59 -57.28 -0.72 -14.85 16 4 C 0.05 1.78 12.00 85.06 1.02 2.80 16 5 C -0.28 -11.19 5.91 -20.14 -0.12 -11.31 16 6 C 0.11 4.94 6.17 41.64 0.26 5.20 16 7 C 0.10 5.18 2.25 -12.13 -0.03 5.15 16 8 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 9 C -0.53 -27.76 7.16 25.60 0.18 -27.58 16 10 H 0.05 2.84 6.07 -2.91 -0.02 2.82 16 11 C 0.02 1.31 5.31 84.66 0.45 1.76 16 12 N -0.91 -49.80 11.52 21.45 0.25 -49.55 16 13 Si 0.95 41.75 29.54 68.60 2.03 43.77 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 C -0.09 -4.22 4.83 30.76 0.15 -4.07 16 18 C -0.12 -4.27 5.90 30.78 0.18 -4.09 16 19 C -0.02 -0.81 6.28 30.04 0.19 -0.62 16 20 H 0.07 2.44 7.54 -2.39 -0.02 2.42 16 21 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 22 H 0.09 3.32 7.27 -2.39 -0.02 3.30 16 23 H 0.21 5.46 8.06 -2.91 -0.02 5.43 16 24 H 0.26 13.73 8.31 -92.70 -0.77 12.96 16 25 H 0.03 1.40 8.08 -2.38 -0.02 1.38 16 26 H 0.06 3.28 6.49 -2.39 -0.02 3.26 16 27 H 0.05 1.80 8.11 -2.39 -0.02 1.78 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -60.39 245.23 4.78 -55.61 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.12 Total: 10.00 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 3.53 Total: -27.45 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.90 Total: -81.94 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -60.39 4.78 -55.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216818.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.005 kcal (2) G-P(sol) polarization free energy of solvation -60.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds