Wall clock time and date at job start Thu Apr 9 2020 14:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.47694 * 2 1 4 4 C 1.50699 * 109.47783 * 120.00405 * 2 1 3 5 5 H 1.08001 * 119.99416 * 28.02142 * 4 2 1 6 6 C 1.37873 * 120.00272 * 208.03010 * 4 2 1 7 7 N 1.31514 * 120.00237 * 352.64018 * 6 4 2 8 8 Si 1.86802 * 120.00003 * 172.63876 * 6 4 2 9 9 H 1.48496 * 109.47075 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47468 * 300.00246 * 8 6 4 11 11 H 1.48507 * 109.47147 * 60.00021 * 8 6 4 12 12 C 1.50711 * 109.46822 * 240.00079 * 2 1 3 13 13 C 1.34661 * 126.59255 * 275.02229 * 12 2 1 14 14 N 1.34125 * 108.02104 * 179.97438 * 13 12 2 15 15 C 1.30499 * 109.25775 * 0.02562 * 14 13 12 16 16 N 1.35047 * 108.69607 * 359.76837 * 15 14 13 17 17 C 1.46501 * 126.39628 * 180.27063 * 16 15 14 18 18 C 1.53001 * 117.49812 * 8.73909 * 17 16 15 19 19 C 1.52998 * 60.00056 * 252.51274 * 18 17 16 20 20 H 1.09006 * 109.46820 * 298.77117 * 1 2 3 21 21 H 1.08998 * 109.47431 * 58.77332 * 1 2 3 22 22 H 1.09004 * 109.47341 * 178.77663 * 1 2 3 23 23 H 0.96999 * 119.99213 * 354.41548 * 7 6 4 24 24 H 1.08011 * 125.98919 * 359.96632 * 13 12 2 25 25 H 1.07998 * 125.65192 * 179.97438 * 15 14 13 26 26 H 1.08998 * 115.55134 * 154.44791 * 17 16 15 27 27 H 1.08997 * 117.49780 * 0.02562 * 18 17 16 28 28 H 1.09001 * 117.49650 * 145.02224 * 18 17 16 29 29 H 1.09004 * 117.50033 * 252.51149 * 19 18 17 30 30 H 1.09002 * 117.50286 * 107.49041 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 1.4340 -1.4832 1.6898 6 6 3.2559 -0.3738 1.7695 7 7 4.0480 0.4608 1.1326 8 14 3.7886 -1.1032 3.4046 9 1 5.1341 -0.5867 3.7622 10 1 2.8147 -0.7203 4.4583 11 1 3.8406 -2.5832 3.2931 12 6 2.0322 -0.7105 -1.2306 13 6 2.2105 -2.0374 -1.3749 14 7 2.6690 -2.2620 -2.6151 15 6 2.7821 -1.1246 -3.2448 16 7 2.3903 -0.1313 -2.4180 17 6 2.3565 1.2991 -2.7326 18 6 2.6073 1.7091 -4.1852 19 6 3.6763 1.9682 -3.1218 20 1 -0.3633 0.4947 0.9009 21 1 -0.3634 0.5327 -0.8787 22 1 -0.3634 -1.0274 -0.0219 23 1 3.8086 0.7763 0.2471 24 1 2.0182 -2.7891 -0.6234 25 1 3.1282 -0.9988 -4.2600 26 1 1.6428 1.8900 -2.1587 27 1 2.7970 0.9145 -4.9068 28 1 2.0584 2.5698 -4.5672 29 1 3.8307 2.9994 -2.8041 30 1 4.5698 1.3441 -3.1436 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227879.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:23 Heat of formation + Delta-G solvation = 74.967421 kcal Electronic energy + Delta-G solvation = -13537.479133 eV Core-core repulsion = 11334.351474 eV Total energy + Delta-G solvation = -2203.127659 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.26989 -36.92299 -34.62394 -31.38663 -30.71924 -27.45466 -24.58578 -23.04730 -22.44746 -21.97621 -20.02608 -18.75293 -17.07924 -16.22495 -15.24411 -14.37160 -13.82065 -13.71612 -13.39073 -13.02402 -12.71015 -12.16021 -11.78512 -11.54750 -11.08549 -10.95696 -10.83572 -10.67276 -10.49553 -10.15385 -9.89751 -9.12982 -8.67118 -8.52933 -8.44838 -7.23173 -6.40075 -4.13695 2.88234 3.35971 3.44889 3.46746 3.63863 3.93066 4.12941 4.51847 4.69197 4.90928 4.96955 5.27861 5.32336 5.58647 5.66444 5.90123 5.97903 6.09747 6.23430 6.35855 6.54760 6.62404 6.78964 7.02806 7.16597 7.46081 7.78372 8.06951 8.16352 8.40275 8.79931 8.99748 9.59934 10.97763 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034230 B = 0.011313 C = 0.010685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.802825 B = 2474.396595 C = 2619.829885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.088 3.912 3 H 0.037 0.963 4 C -0.585 4.585 5 H 0.055 0.945 6 C 0.025 3.975 7 N -0.902 5.902 8 Si 1.065 2.935 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.286 1.286 12 C 0.042 3.958 13 C -0.040 4.040 14 N -0.498 5.498 15 C 0.133 3.867 16 N -0.437 5.437 17 C 0.070 3.930 18 C -0.180 4.180 19 C -0.177 4.177 20 H 0.051 0.949 21 H 0.022 0.978 22 H 0.044 0.956 23 H 0.270 0.730 24 H 0.162 0.838 25 H 0.186 0.814 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 3.708 -7.194 8.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.055 0.945 4 C -0.623 4.623 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.537 5.537 8 Si 0.893 3.107 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.212 1.212 12 C -0.072 4.072 13 C -0.185 4.185 14 N -0.217 5.217 15 C -0.146 4.146 16 N -0.122 5.122 17 C -0.035 4.035 18 C -0.218 4.218 19 C -0.215 4.215 20 H 0.070 0.930 21 H 0.041 0.959 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.179 0.821 25 H 0.202 0.798 26 H 0.152 0.848 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.741 3.081 -6.413 7.324 hybrid contribution -1.213 0.700 -0.981 1.710 sum -2.954 3.781 -7.394 8.814 Atomic orbital electron populations 1.21711 0.97268 1.00307 0.98809 1.17571 0.91481 0.95748 0.88396 0.94508 1.21762 1.06046 1.23979 1.10474 0.92650 1.25843 0.93000 0.95218 1.03966 1.70771 1.38216 1.30141 1.14534 0.83603 0.76255 0.75975 0.74850 1.20879 1.21324 1.21246 1.22966 1.02663 0.94584 0.87008 1.21770 1.08168 0.94567 0.94030 1.70130 1.18744 1.25628 1.07155 1.24368 1.08829 0.83138 0.98297 1.44882 1.49697 1.05192 1.12390 1.21739 1.01574 0.81501 0.98668 1.23347 1.03295 1.03654 0.91494 1.23403 0.93699 1.02439 1.01931 0.93038 0.95896 0.93636 0.91952 0.82111 0.79757 0.84824 0.88163 0.87557 0.87550 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.16 37.15 0.34 -2.24 16 2 C 0.09 2.15 2.13 -92.92 -0.20 1.95 16 3 H 0.04 0.95 6.58 -51.93 -0.34 0.61 16 4 C -0.58 -15.84 7.64 -34.44 -0.26 -16.10 16 5 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 6 C 0.03 0.71 5.45 -17.82 -0.10 0.61 16 7 N -0.90 -26.74 13.55 55.43 0.75 -25.99 16 8 Si 1.07 24.92 29.91 -169.99 -5.08 19.84 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.04 0.99 5.58 -81.60 -0.46 0.53 16 13 C -0.04 -0.98 11.10 -17.82 -0.20 -1.18 16 14 N -0.50 -11.56 11.25 -14.66 -0.16 -11.72 16 15 C 0.13 2.68 11.89 -90.37 -1.07 1.60 16 16 N -0.44 -8.93 3.09 -106.91 -0.33 -9.26 16 17 C 0.07 1.15 6.46 -67.93 -0.44 0.71 16 18 C -0.18 -2.16 9.98 -26.73 -0.27 -2.43 16 19 C -0.18 -2.49 10.39 -26.73 -0.28 -2.77 16 20 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.27 7.97 6.72 -40.82 -0.27 7.69 16 24 H 0.16 3.94 7.96 -52.48 -0.42 3.52 16 25 H 0.19 2.91 7.03 -52.49 -0.37 2.54 16 26 H 0.13 2.14 7.91 -51.93 -0.41 1.73 16 27 H 0.10 1.13 6.85 -51.93 -0.36 0.78 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 258.60 15.07 3.90 3.90 Total: -1.00 -31.39 258.60 -7.77 -39.16 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.91 Total: 3.38 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.93 Total: -19.30 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.26 Total: -46.97 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.39 -7.77 -39.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227879.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.128 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds