Wall clock time and date at job start Thu Apr 9 2020 14:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.47694 * 2 1 4 4 C 1.50699 * 109.47783 * 120.00405 * 2 1 3 5 5 H 1.08001 * 119.99416 * 28.02142 * 4 2 1 6 6 C 1.37873 * 120.00272 * 208.03010 * 4 2 1 7 7 N 1.31514 * 120.00237 * 352.64018 * 6 4 2 8 8 Si 1.86802 * 120.00003 * 172.63876 * 6 4 2 9 9 H 1.48496 * 109.47075 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47468 * 300.00246 * 8 6 4 11 11 H 1.48507 * 109.47147 * 60.00021 * 8 6 4 12 12 C 1.50711 * 109.46822 * 240.00079 * 2 1 3 13 13 C 1.34661 * 126.59255 * 275.02229 * 12 2 1 14 14 N 1.34125 * 108.02104 * 179.97438 * 13 12 2 15 15 C 1.30499 * 109.25775 * 0.02562 * 14 13 12 16 16 N 1.35047 * 108.69607 * 359.76837 * 15 14 13 17 17 C 1.46501 * 126.39628 * 180.27063 * 16 15 14 18 18 C 1.53001 * 117.49812 * 8.73909 * 17 16 15 19 19 C 1.52998 * 60.00056 * 252.51274 * 18 17 16 20 20 H 1.09006 * 109.46820 * 298.77117 * 1 2 3 21 21 H 1.08998 * 109.47431 * 58.77332 * 1 2 3 22 22 H 1.09004 * 109.47341 * 178.77663 * 1 2 3 23 23 H 0.96999 * 119.99213 * 354.41548 * 7 6 4 24 24 H 1.08011 * 125.98919 * 359.96632 * 13 12 2 25 25 H 1.07998 * 125.65192 * 179.97438 * 15 14 13 26 26 H 1.08998 * 115.55134 * 154.44791 * 17 16 15 27 27 H 1.08997 * 117.49780 * 0.02562 * 18 17 16 28 28 H 1.09001 * 117.49650 * 145.02224 * 18 17 16 29 29 H 1.09004 * 117.50033 * 252.51149 * 19 18 17 30 30 H 1.09002 * 117.50286 * 107.49041 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 1.4340 -1.4832 1.6898 6 6 3.2559 -0.3738 1.7695 7 7 4.0480 0.4608 1.1326 8 14 3.7886 -1.1032 3.4046 9 1 5.1341 -0.5867 3.7622 10 1 2.8147 -0.7203 4.4583 11 1 3.8406 -2.5832 3.2931 12 6 2.0322 -0.7105 -1.2306 13 6 2.2105 -2.0374 -1.3749 14 7 2.6690 -2.2620 -2.6151 15 6 2.7821 -1.1246 -3.2448 16 7 2.3903 -0.1313 -2.4180 17 6 2.3565 1.2991 -2.7326 18 6 2.6073 1.7091 -4.1852 19 6 3.6763 1.9682 -3.1218 20 1 -0.3633 0.4947 0.9009 21 1 -0.3634 0.5327 -0.8787 22 1 -0.3634 -1.0274 -0.0219 23 1 3.8086 0.7763 0.2471 24 1 2.0182 -2.7891 -0.6234 25 1 3.1282 -0.9988 -4.2600 26 1 1.6428 1.8900 -2.1587 27 1 2.7970 0.9145 -4.9068 28 1 2.0584 2.5698 -4.5672 29 1 3.8307 2.9994 -2.8041 30 1 4.5698 1.3441 -3.1436 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227879.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:23 Heat of formation + Delta-G solvation = 57.384691 kcal Electronic energy + Delta-G solvation = -13538.241577 eV Core-core repulsion = 11334.351474 eV Total energy + Delta-G solvation = -2203.890103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.92684 -38.14957 -36.58445 -33.25901 -32.41555 -29.18695 -26.63862 -24.47091 -23.86428 -23.44124 -21.72634 -20.38219 -18.85261 -17.94054 -16.51871 -16.11733 -15.63804 -15.47110 -14.92104 -14.68453 -14.39447 -13.87386 -13.50660 -12.88605 -12.72121 -12.53598 -12.47493 -12.20947 -12.00082 -11.82339 -11.62364 -10.93679 -10.66439 -10.52885 -10.04917 -9.03545 -8.59126 -6.32627 1.26939 1.54106 1.61206 1.79428 1.92033 2.32960 2.58324 2.77042 3.19258 3.51855 3.80068 3.84089 3.88387 4.10853 4.44870 4.55992 4.61898 4.68964 4.78082 4.84539 4.87499 5.02332 5.06960 5.30152 5.41397 5.59836 5.95135 6.11420 6.23337 6.51752 6.65156 7.26472 7.47528 8.78833 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.034230 B = 0.011313 C = 0.010685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.802825 B = 2474.396595 C = 2619.829885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.088 3.912 3 H 0.017 0.983 4 C -0.591 4.591 5 H 0.050 0.950 6 C -0.024 4.024 7 N -0.931 5.931 8 Si 1.107 2.893 9 H -0.288 1.288 10 H -0.265 1.265 11 H -0.277 1.277 12 C 0.025 3.975 13 C -0.067 4.067 14 N -0.528 5.528 15 C 0.151 3.849 16 N -0.435 5.435 17 C 0.024 3.976 18 C -0.134 4.134 19 C -0.179 4.179 20 H 0.056 0.944 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.259 0.741 24 H 0.146 0.854 25 H 0.232 0.768 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 4.486 -8.556 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.067 3.933 3 H 0.035 0.965 4 C -0.629 4.629 5 H 0.069 0.931 6 C -0.223 4.223 7 N -0.567 5.567 8 Si 0.930 3.070 9 H -0.214 1.214 10 H -0.190 1.190 11 H -0.203 1.203 12 C -0.091 4.091 13 C -0.212 4.212 14 N -0.247 5.247 15 C -0.130 4.130 16 N -0.117 5.117 17 C -0.080 4.080 18 C -0.171 4.171 19 C -0.217 4.217 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.164 0.836 25 H 0.248 0.752 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.103 3.880 -7.782 8.946 hybrid contribution -1.128 0.497 -0.662 1.399 sum -3.231 4.377 -8.444 10.045 Atomic orbital electron populations 1.21598 0.94892 1.00579 1.00122 1.17486 0.93478 0.94201 0.88096 0.96452 1.22081 1.05795 1.23512 1.11492 0.93141 1.27106 0.93383 0.95132 1.06679 1.70880 1.39126 1.32171 1.14524 0.83062 0.76085 0.75780 0.72115 1.21385 1.19022 1.20258 1.22580 1.03845 0.94426 0.88206 1.21717 1.09751 0.94874 0.94836 1.70086 1.20315 1.27468 1.06856 1.25218 1.06130 0.82179 0.99462 1.44983 1.48513 1.07066 1.11166 1.22137 1.03617 0.79362 1.02866 1.23532 1.00234 1.04384 0.88940 1.23446 0.92509 1.02574 1.03190 0.92493 0.93760 0.93839 0.93144 0.83621 0.75199 0.85190 0.86713 0.84190 0.86123 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.16 71.98 0.66 -4.08 16 2 C 0.09 4.33 2.13 -12.29 -0.03 4.31 16 3 H 0.02 0.92 6.58 -2.39 -0.02 0.90 16 4 C -0.59 -32.54 7.64 25.60 0.20 -32.35 16 5 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 6 C -0.02 -1.33 5.45 84.65 0.46 -0.87 16 7 N -0.93 -56.24 13.55 21.45 0.29 -55.95 16 8 Si 1.11 50.45 29.91 68.60 2.05 52.50 16 9 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.03 1.20 5.58 40.95 0.23 1.43 16 13 C -0.07 -3.34 11.10 83.52 0.93 -2.41 16 14 N -0.53 -24.34 11.25 -200.31 -2.25 -26.59 16 15 C 0.15 5.78 11.89 180.26 2.14 7.92 16 16 N -0.43 -17.32 3.09 -492.17 -1.52 -18.84 16 17 C 0.02 0.74 6.46 44.99 0.29 1.03 16 18 C -0.13 -2.63 9.98 30.59 0.31 -2.33 16 19 C -0.18 -4.66 10.39 30.59 0.32 -4.34 16 20 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 21 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.26 15.72 6.72 -92.71 -0.62 15.09 16 24 H 0.15 7.47 7.96 -2.90 -0.02 7.45 16 25 H 0.23 6.32 7.03 -2.91 -0.02 6.30 16 26 H 0.13 4.04 7.91 -2.39 -0.02 4.02 16 27 H 0.11 1.98 6.85 -2.39 -0.02 1.96 16 28 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -69.05 258.60 5.34 -63.71 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.26 Total: 16.86 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 5.50 Total: -31.69 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -3.48 Total: -101.38 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -69.05 5.34 -63.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227879.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.098 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds