Wall clock time and date at job start Thu Apr 9 2020 14:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38618 * 120.44857 * 124.71913 * 3 2 1 5 5 C 1.38576 * 118.39427 * 179.80507 * 4 3 2 6 6 C 1.50703 * 120.44369 * 180.21925 * 5 4 3 7 7 C 1.53004 * 109.47003 * 125.25352 * 6 5 4 8 8 C 1.50695 * 109.47148 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00048 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00247 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00035 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99811 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47292 * 89.99793 * 12 10 8 14 14 H 1.48495 * 109.47225 * 209.99908 * 12 10 8 15 15 H 1.48498 * 109.47425 * 329.99963 * 12 10 8 16 16 N 1.32345 * 119.10895 * 0.47127 * 5 4 3 17 17 C 1.31778 * 120.81815 * 359.74510 * 16 5 4 18 18 N 1.31815 * 121.75600 * 0.02685 * 17 16 5 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 24 24 H 1.08001 * 120.80288 * 0.02562 * 4 3 2 25 25 H 1.08993 * 109.47401 * 245.25162 * 6 5 4 26 26 H 1.09003 * 109.47460 * 5.25875 * 6 5 4 27 27 H 1.09001 * 109.47160 * 300.00043 * 7 6 5 28 28 H 1.09001 * 109.47044 * 59.99729 * 7 6 5 29 29 H 0.97009 * 119.99507 * 179.97438 * 11 10 8 30 30 H 1.08000 * 119.12619 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9082 1.8563 0.9822 5 6 3.3464 3.1702 0.9390 6 6 4.3028 3.6908 1.9809 7 6 5.5316 4.2880 1.2921 8 6 6.4877 4.8092 2.3337 9 1 6.2436 4.7227 3.3822 10 6 7.6747 5.3954 1.9484 11 7 8.5093 5.8498 2.8575 12 14 8.0973 5.5443 0.1349 13 1 7.5779 6.8326 -0.3903 14 1 9.5718 5.4988 -0.0351 15 1 7.4781 4.4198 -0.6116 16 7 2.9098 3.9631 -0.0265 17 6 2.0734 3.5155 -0.9412 18 7 1.6390 2.2710 -0.9345 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.2438 1.1866 1.7603 25 1 3.8096 4.4602 2.5748 26 1 4.6126 2.8726 2.6310 27 1 6.0250 3.5186 0.6980 28 1 5.2219 5.1062 0.6418 29 1 9.3446 6.2619 2.5863 30 1 1.7349 4.1862 -1.7171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:32 Heat of formation + Delta-G solvation = 22.021097 kcal Electronic energy + Delta-G solvation = -12661.860926 eV Core-core repulsion = 10456.437343 eV Total energy + Delta-G solvation = -2205.423584 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83600 -35.49965 -34.18502 -32.58924 -30.98705 -30.26565 -26.27460 -24.40539 -23.69771 -21.51454 -20.08175 -17.15447 -16.94796 -16.00865 -15.24722 -14.94632 -14.28738 -14.04679 -13.90451 -13.11047 -12.93248 -12.53176 -12.42032 -11.68595 -11.58326 -11.33543 -11.04810 -10.61616 -10.46781 -10.11603 -9.81201 -9.74810 -9.23241 -9.14965 -8.83927 -8.53103 -6.05165 -4.03539 1.16457 1.33042 3.33327 3.39875 3.45413 4.00355 4.13744 4.42089 4.46403 4.53869 5.00251 5.10428 5.22609 5.29776 5.34215 5.47360 5.65746 5.70438 5.81869 5.95544 6.10013 6.23216 6.33216 6.57506 6.79453 7.25702 7.28662 7.43789 7.76712 8.39034 8.50472 8.98385 9.57419 11.08002 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.057397 B = 0.006815 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.714523 B = 4107.834536 C = 4303.177782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C 0.170 3.830 4 C -0.231 4.231 5 C 0.197 3.803 6 C -0.063 4.063 7 C -0.003 4.003 8 C -0.522 4.522 9 H 0.073 0.927 10 C 0.069 3.931 11 N -0.903 5.903 12 Si 0.880 3.120 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.267 1.267 16 N -0.518 5.518 17 C 0.293 3.707 18 N -0.535 5.535 19 H 0.059 0.941 20 H 0.066 0.934 21 H 0.052 0.948 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.144 0.856 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.012 0.988 28 H 0.026 0.974 29 H 0.263 0.737 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.670 -10.251 -5.840 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C 0.024 3.976 4 C -0.253 4.253 5 C 0.052 3.948 6 C -0.101 4.101 7 C -0.041 4.041 8 C -0.560 4.560 9 H 0.092 0.908 10 C -0.132 4.132 11 N -0.542 5.542 12 Si 0.707 3.293 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.192 1.192 16 N -0.232 5.232 17 C 0.005 3.995 18 N -0.251 5.251 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.071 0.929 22 H 0.100 0.900 23 H 0.103 0.897 24 H 0.162 0.838 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.799 -9.549 -6.514 18.001 hybrid contribution 0.687 -0.325 -0.321 0.825 sum -13.112 -9.874 -6.835 17.780 Atomic orbital electron populations 1.21655 0.93932 1.01701 1.02708 1.20512 0.97094 0.90072 1.03441 1.21633 0.90762 0.96059 0.89152 1.22697 1.01882 0.98410 1.02311 1.22357 0.90741 0.89400 0.92320 1.20720 0.94461 1.00933 0.93957 1.19492 0.91843 0.96048 0.96679 1.21099 1.02252 1.38530 0.94149 0.90842 1.24978 0.96100 0.94767 0.97387 1.69913 1.10652 1.40374 1.33223 0.86778 0.77229 0.79189 0.86103 1.20094 1.21408 1.19206 1.68313 1.11966 1.39089 1.03851 1.24922 0.89462 0.90085 0.95013 1.68134 1.26662 1.04656 1.25659 0.92242 0.91534 0.92909 0.90006 0.89704 0.83841 0.89821 0.90494 0.96949 0.95535 0.92695 0.79215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.78 37.16 0.36 -0.93 16 2 C -0.07 -0.74 6.37 -27.88 -0.18 -0.92 16 3 C 0.17 2.37 6.21 -82.24 -0.51 1.86 16 4 C -0.23 -3.48 9.44 -39.32 -0.37 -3.85 16 5 C 0.20 3.56 6.20 -82.24 -0.51 3.05 16 6 C -0.06 -1.25 5.59 -27.88 -0.16 -1.40 16 7 C 0.00 -0.07 3.91 -27.88 -0.11 -0.18 16 8 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 9 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 12 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 16 N -0.52 -9.57 10.04 -10.80 -0.11 -9.68 16 17 C 0.29 4.57 12.29 -92.15 -1.13 3.44 16 18 N -0.54 -8.08 10.04 -10.79 -0.11 -8.19 16 19 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.07 0.67 7.98 -51.93 -0.41 0.26 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.14 1.78 7.96 -52.49 -0.42 1.36 16 25 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 26 H 0.08 1.40 7.94 -51.93 -0.41 0.99 16 27 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 28 H 0.03 0.67 7.41 -51.93 -0.38 0.28 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 260.52 15.07 3.93 3.93 Total: -1.00 -32.16 260.52 -7.33 -39.50 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -4.12 Total: -3.79 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.03 Total: -12.24 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.56 Total: -45.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.16 -7.33 -39.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.517 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds