Wall clock time and date at job start Thu Apr 9 2020 14:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38618 * 120.44857 * 124.71913 * 3 2 1 5 5 C 1.38576 * 118.39427 * 179.80507 * 4 3 2 6 6 C 1.50703 * 120.44369 * 180.21925 * 5 4 3 7 7 C 1.53004 * 109.47003 * 125.25352 * 6 5 4 8 8 C 1.50695 * 109.47148 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00048 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00247 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00035 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99811 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47292 * 89.99793 * 12 10 8 14 14 H 1.48495 * 109.47225 * 209.99908 * 12 10 8 15 15 H 1.48498 * 109.47425 * 329.99963 * 12 10 8 16 16 N 1.32345 * 119.10895 * 0.47127 * 5 4 3 17 17 C 1.31778 * 120.81815 * 359.74510 * 16 5 4 18 18 N 1.31815 * 121.75600 * 0.02685 * 17 16 5 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 24 24 H 1.08001 * 120.80288 * 0.02562 * 4 3 2 25 25 H 1.08993 * 109.47401 * 245.25162 * 6 5 4 26 26 H 1.09003 * 109.47460 * 5.25875 * 6 5 4 27 27 H 1.09001 * 109.47160 * 300.00043 * 7 6 5 28 28 H 1.09001 * 109.47044 * 59.99729 * 7 6 5 29 29 H 0.97009 * 119.99507 * 179.97438 * 11 10 8 30 30 H 1.08000 * 119.12619 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9082 1.8563 0.9822 5 6 3.3464 3.1702 0.9390 6 6 4.3028 3.6908 1.9809 7 6 5.5316 4.2880 1.2921 8 6 6.4877 4.8092 2.3337 9 1 6.2436 4.7227 3.3822 10 6 7.6747 5.3954 1.9484 11 7 8.5093 5.8498 2.8575 12 14 8.0973 5.5443 0.1349 13 1 7.5779 6.8326 -0.3903 14 1 9.5718 5.4988 -0.0351 15 1 7.4781 4.4198 -0.6116 16 7 2.9098 3.9631 -0.0265 17 6 2.0734 3.5155 -0.9412 18 7 1.6390 2.2710 -0.9345 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.2438 1.1866 1.7603 25 1 3.8096 4.4602 2.5748 26 1 4.6126 2.8726 2.6310 27 1 6.0250 3.5186 0.6980 28 1 5.2219 5.1062 0.6418 29 1 9.3446 6.2619 2.5863 30 1 1.7349 4.1862 -1.7171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:31 Heat of formation + Delta-G solvation = 2.469535 kcal Electronic energy + Delta-G solvation = -12662.708746 eV Core-core repulsion = 10456.437343 eV Total energy + Delta-G solvation = -2206.271403 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03032 -36.82380 -35.59003 -34.42384 -32.36840 -31.63492 -27.97871 -25.53405 -24.93815 -23.08157 -21.52595 -19.04504 -18.36768 -17.25227 -16.45411 -16.36705 -15.93064 -15.32724 -14.93038 -14.77424 -14.55010 -14.23224 -13.47608 -13.24588 -12.98118 -12.45401 -12.23599 -12.11617 -11.96276 -11.81457 -11.70135 -11.41491 -11.09889 -10.78576 -10.39386 -10.09757 -8.31872 -6.35277 -0.00565 0.10582 1.33308 1.33750 1.45849 2.33365 2.80337 3.03768 3.13502 3.19384 3.43368 4.05393 4.12895 4.26747 4.35870 4.43870 4.55682 4.67108 4.70107 4.89491 4.98415 5.05502 5.15806 5.32068 5.37586 5.46679 5.51903 5.64214 6.13227 6.24236 6.71685 7.18654 7.29530 8.84491 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.057397 B = 0.006815 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.714523 B = 4107.834536 C = 4303.177782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 C 0.170 3.830 4 C -0.228 4.228 5 C 0.172 3.828 6 C -0.055 4.055 7 C 0.005 3.995 8 C -0.531 4.531 9 H 0.043 0.957 10 C 0.011 3.989 11 N -0.946 5.946 12 Si 0.945 3.055 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.258 1.258 16 N -0.551 5.551 17 C 0.288 3.712 18 N -0.538 5.538 19 H 0.083 0.917 20 H 0.053 0.947 21 H 0.046 0.954 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.170 0.830 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.010 0.990 28 H 0.017 0.983 29 H 0.267 0.733 30 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 -11.929 -7.326 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C 0.024 3.976 4 C -0.249 4.249 5 C 0.028 3.972 6 C -0.093 4.093 7 C -0.033 4.033 8 C -0.569 4.569 9 H 0.061 0.939 10 C -0.186 4.186 11 N -0.587 5.587 12 Si 0.769 3.231 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.183 1.183 16 N -0.267 5.267 17 C 0.000 4.000 18 N -0.253 5.253 19 H 0.101 0.899 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.123 0.877 23 H 0.114 0.886 24 H 0.187 0.813 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -14.892 -11.233 -7.997 20.295 hybrid contribution 0.948 0.157 0.195 0.981 sum -13.943 -11.077 -7.802 19.442 Atomic orbital electron populations 1.21634 0.93175 1.03019 1.01804 1.20687 0.97609 0.87590 1.05112 1.22318 0.89647 0.97593 0.88036 1.22933 1.01523 0.97339 1.03140 1.22092 0.91766 0.90870 0.92451 1.20486 0.93221 1.01074 0.94472 1.19321 0.92818 0.95627 0.95502 1.21439 1.03213 1.38324 0.93908 0.93872 1.25868 0.96095 0.94520 1.02120 1.70043 1.11400 1.41663 1.35589 0.85732 0.77377 0.79574 0.80369 1.19349 1.20462 1.18253 1.68242 1.13375 1.40193 1.04862 1.25465 0.88753 0.90850 0.94927 1.68256 1.26491 1.04616 1.25984 0.89852 0.92790 0.93456 0.87701 0.88607 0.81262 0.90600 0.89151 0.97199 0.96422 0.92375 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.78 71.98 0.70 -1.39 16 2 C -0.07 -1.20 6.37 29.85 0.19 -1.01 16 3 C 0.17 4.30 6.21 42.58 0.26 4.57 16 4 C -0.23 -6.32 9.44 22.44 0.21 -6.11 16 5 C 0.17 6.06 6.20 42.56 0.26 6.32 16 6 C -0.05 -2.16 5.59 29.85 0.17 -2.00 16 7 C 0.01 0.26 3.91 29.85 0.12 0.37 16 8 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 9 H 0.04 2.69 7.99 -2.91 -0.02 2.67 16 10 C 0.01 0.67 5.47 84.66 0.46 1.13 16 11 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 12 Si 0.95 45.95 27.47 68.60 1.88 47.84 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 15 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 16 N -0.55 -19.87 10.04 -188.08 -1.89 -21.76 16 17 C 0.29 8.51 12.29 180.88 2.22 10.73 16 18 N -0.54 -15.06 10.04 -188.06 -1.89 -16.94 16 19 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 20 H 0.05 0.96 7.98 -2.39 -0.02 0.94 16 21 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 22 H 0.10 1.29 7.94 -2.39 -0.02 1.27 16 23 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.17 3.67 7.96 -2.91 -0.02 3.64 16 25 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 26 H 0.09 3.25 7.94 -2.39 -0.02 3.23 16 27 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 28 H 0.02 0.88 7.41 -2.39 -0.02 0.86 16 29 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 30 H 0.22 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -69.41 260.52 4.31 -65.10 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.05 Total: 3.09 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.85 Total: -18.02 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -3.48 Total: -98.00 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.84 kcal Total: -69.41 4.31 -65.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.570 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds