Wall clock time and date at job start Thu Apr 9 2020 14:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.31798 * 119.12087 * 59.72924 * 4 2 1 6 6 C 1.32336 * 120.81530 * 179.76112 * 5 4 2 7 7 C 1.38595 * 119.10192 * 0.50551 * 6 5 4 8 8 C 1.50702 * 120.79796 * 179.72890 * 7 6 5 9 9 C 1.50703 * 109.47233 * 270.02410 * 8 7 6 10 10 H 1.07992 * 119.99974 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99943 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00117 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99823 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47414 * 89.99878 * 13 11 9 15 15 H 1.48505 * 109.46913 * 209.99955 * 13 11 9 16 16 H 1.48499 * 109.47021 * 329.99906 * 13 11 9 17 17 C 1.38596 * 118.40445 * 359.75248 * 7 6 5 18 18 N 1.31793 * 119.12316 * 240.00052 * 4 2 1 19 19 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 23 23 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 24 24 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 26 26 H 1.08005 * 120.44872 * 180.23451 * 6 5 4 27 27 H 1.09003 * 109.47402 * 30.02454 * 8 7 6 28 28 H 1.08998 * 109.47696 * 150.01989 * 8 7 6 29 29 H 0.97000 * 119.99784 * 180.02562 * 12 11 9 30 30 H 1.08005 * 120.44904 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6989 -0.2482 -2.4189 6 6 2.1250 -0.8430 -3.5216 7 6 2.9227 -1.9712 -3.4138 8 6 3.4242 -2.6822 -4.6443 9 6 2.4309 -3.7390 -5.0538 10 1 1.5271 -3.8818 -4.4801 11 6 2.6765 -4.5242 -6.1602 12 7 3.7773 -4.3506 -6.8585 13 14 1.4455 -5.8346 -6.6673 14 1 0.4592 -5.2489 -7.6103 15 1 2.1601 -6.9546 -7.3308 16 1 0.7388 -6.3420 -5.4639 17 6 3.2478 -2.4302 -2.1471 18 7 2.7888 -1.7803 -1.0896 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 1.6768 1.9562 0.8901 24 1 3.1301 1.4425 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.8513 -0.4570 -4.4925 27 1 3.5453 -1.9638 -5.4551 28 1 4.3843 -3.1505 -4.4276 29 1 3.9498 -4.9028 -7.6371 30 1 3.8669 -3.3067 -2.0246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:34 Heat of formation + Delta-G solvation = 19.183619 kcal Electronic energy + Delta-G solvation = -12815.434786 eV Core-core repulsion = 10609.888160 eV Total energy + Delta-G solvation = -2205.546626 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.48110 -35.61790 -33.54145 -33.02081 -31.41287 -27.36452 -27.04504 -24.28727 -23.88564 -21.79018 -20.22518 -17.05874 -16.48784 -16.18557 -14.77531 -14.41557 -14.16559 -13.73398 -13.28823 -12.80163 -12.79529 -12.30987 -12.02124 -11.57299 -11.49657 -11.13777 -11.00048 -10.82105 -10.73531 -10.47357 -10.14478 -9.73670 -9.54917 -8.67746 -8.45400 -8.29629 -6.16778 -4.22175 1.65199 1.72452 3.23969 3.30751 3.34672 4.28480 4.33827 4.43330 4.70530 5.18044 5.21192 5.30768 5.35261 5.42808 5.72145 5.79293 5.82881 5.91296 5.96647 6.01275 6.31377 6.33755 6.40672 6.63235 7.08390 7.35750 7.47202 7.64624 7.78077 8.13709 8.70822 8.82148 9.43102 10.92937 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.057585 B = 0.007035 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.121523 B = 3978.959019 C = 4143.075068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.020 4.020 3 C -0.138 4.138 4 C 0.280 3.720 5 N -0.515 5.515 6 C 0.133 3.867 7 C -0.135 4.135 8 C 0.057 3.943 9 C -0.519 4.519 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.132 3.868 18 N -0.522 5.522 19 H 0.051 0.949 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.163 0.837 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 7.244 9.620 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 C -0.196 4.196 4 C 0.012 3.988 5 N -0.229 5.229 6 C -0.033 4.033 7 C -0.138 4.138 8 C 0.019 3.981 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.725 3.275 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.033 4.033 18 N -0.235 5.235 19 H 0.070 0.930 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.180 0.820 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.366 7.634 10.276 13.236 hybrid contribution -0.254 -1.366 -1.289 1.895 sum -3.621 6.268 8.987 11.540 Atomic orbital electron populations 1.21768 0.93759 1.01918 1.02236 1.19785 0.96051 0.95398 0.92785 1.21765 1.00805 0.94794 1.02254 1.22771 0.92658 0.90519 0.92814 1.68020 1.23053 1.32873 0.98910 1.23108 0.91750 0.91607 0.96806 1.22423 0.96433 0.95670 0.99314 1.18249 0.96876 0.94837 0.88135 1.20990 1.05592 1.17385 1.11746 0.92599 1.24990 0.95523 0.97368 0.96133 1.69943 1.24814 1.40012 1.18115 0.86503 0.81074 0.81151 0.78818 1.20449 1.20991 1.19806 1.23100 0.95362 0.97309 0.87518 1.68115 1.11578 1.08446 1.35356 0.92958 0.92259 0.91567 0.89371 0.92253 0.93025 0.91591 0.81995 0.94714 0.94718 0.92609 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.09 37.16 0.34 -1.41 16 2 C -0.02 -0.28 3.25 -91.77 -0.30 -0.58 16 3 C -0.14 -1.67 9.09 37.16 0.34 -1.34 16 4 C 0.28 5.08 6.34 -157.19 -1.00 4.08 16 5 N -0.52 -9.70 9.81 -10.72 -0.11 -9.81 16 6 C 0.13 2.62 11.01 -17.20 -0.19 2.43 16 7 C -0.13 -2.84 5.10 -104.36 -0.53 -3.38 16 8 C 0.06 1.39 5.15 -29.03 -0.15 1.24 16 9 C -0.52 -13.96 9.09 -34.44 -0.31 -14.28 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 13 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 C 0.13 2.64 11.01 -17.20 -0.19 2.45 16 18 N -0.52 -10.08 10.31 -10.72 -0.11 -10.19 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 22 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 26 H 0.16 2.91 8.06 -52.48 -0.42 2.49 16 27 H 0.03 0.87 8.10 -51.93 -0.42 0.45 16 28 H 0.03 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.16 2.95 8.06 -52.48 -0.42 2.53 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -28.96 263.92 -6.79 -35.75 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.17 Total: -1.89 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.09 Total: -9.18 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.52 Total: -44.62 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.96 -6.79 -35.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.932 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds