Wall clock time and date at job start Thu Apr 9 2020 14:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.31798 * 119.12087 * 59.72924 * 4 2 1 6 6 C 1.32336 * 120.81530 * 179.76112 * 5 4 2 7 7 C 1.38595 * 119.10192 * 0.50551 * 6 5 4 8 8 C 1.50702 * 120.79796 * 179.72890 * 7 6 5 9 9 C 1.50703 * 109.47233 * 270.02410 * 8 7 6 10 10 H 1.07992 * 119.99974 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99943 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00117 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99823 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47414 * 89.99878 * 13 11 9 15 15 H 1.48505 * 109.46913 * 209.99955 * 13 11 9 16 16 H 1.48499 * 109.47021 * 329.99906 * 13 11 9 17 17 C 1.38596 * 118.40445 * 359.75248 * 7 6 5 18 18 N 1.31793 * 119.12316 * 240.00052 * 4 2 1 19 19 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 23 23 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 24 24 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 26 26 H 1.08005 * 120.44872 * 180.23451 * 6 5 4 27 27 H 1.09003 * 109.47402 * 30.02454 * 8 7 6 28 28 H 1.08998 * 109.47696 * 150.01989 * 8 7 6 29 29 H 0.97000 * 119.99784 * 180.02562 * 12 11 9 30 30 H 1.08005 * 120.44904 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6989 -0.2482 -2.4189 6 6 2.1250 -0.8430 -3.5216 7 6 2.9227 -1.9712 -3.4138 8 6 3.4242 -2.6822 -4.6443 9 6 2.4309 -3.7390 -5.0538 10 1 1.5271 -3.8818 -4.4801 11 6 2.6765 -4.5242 -6.1602 12 7 3.7773 -4.3506 -6.8585 13 14 1.4455 -5.8346 -6.6673 14 1 0.4592 -5.2489 -7.6103 15 1 2.1601 -6.9546 -7.3308 16 1 0.7388 -6.3420 -5.4639 17 6 3.2478 -2.4302 -2.1471 18 7 2.7888 -1.7803 -1.0896 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 1.6768 1.9562 0.8901 24 1 3.1301 1.4425 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.8513 -0.4570 -4.4925 27 1 3.5453 -1.9638 -5.4551 28 1 4.3843 -3.1505 -4.4276 29 1 3.9498 -4.9028 -7.6371 30 1 3.8669 -3.3067 -2.0246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:33 Heat of formation + Delta-G solvation = 2.637049 kcal Electronic energy + Delta-G solvation = -12816.152299 eV Core-core repulsion = 10609.888160 eV Total energy + Delta-G solvation = -2206.264139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.99623 -36.94498 -35.36376 -34.55820 -33.16810 -29.16207 -28.01116 -26.00146 -25.46942 -23.44068 -21.56694 -18.58494 -18.54934 -17.59504 -16.69382 -15.88342 -15.33003 -15.07980 -14.87778 -14.42245 -14.31631 -13.75402 -13.47607 -13.18200 -12.94689 -12.65247 -12.58352 -12.20150 -12.12026 -11.82442 -11.68333 -11.66211 -11.29816 -10.66430 -10.10540 -9.95881 -8.24865 -6.37650 0.09966 0.15584 1.39874 1.40698 1.51371 2.37517 2.86937 3.01721 3.07800 3.26286 3.85502 4.08843 4.14426 4.19267 4.25239 4.34883 4.73716 4.84726 4.87732 4.98112 5.01665 5.10984 5.28168 5.36203 5.41063 5.54729 5.59903 5.67861 6.06641 6.11597 6.73278 7.18569 7.31627 8.84790 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.057585 B = 0.007035 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.121523 B = 3978.959019 C = 4143.075068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 C -0.132 4.132 4 C 0.280 3.720 5 N -0.517 5.517 6 C 0.135 3.865 7 C -0.157 4.157 8 C 0.069 3.931 9 C -0.533 4.533 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.961 3.039 14 H -0.272 1.272 15 H -0.278 1.278 16 H -0.270 1.270 17 C 0.133 3.867 18 N -0.530 5.530 19 H 0.040 0.960 20 H 0.092 0.908 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.174 0.826 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.267 0.733 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 7.662 10.877 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.044 4.044 3 C -0.190 4.190 4 C 0.013 3.987 5 N -0.230 5.230 6 C -0.031 4.031 7 C -0.161 4.161 8 C 0.031 3.969 9 C -0.571 4.571 10 H 0.068 0.932 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.786 3.214 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.195 1.195 17 C -0.032 4.032 18 N -0.243 5.243 19 H 0.059 0.941 20 H 0.111 0.889 21 H 0.075 0.925 22 H 0.116 0.884 23 H 0.110 0.890 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.191 0.809 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.572 8.061 11.543 14.803 hybrid contribution 0.122 -1.429 -1.601 2.150 sum -4.450 6.632 9.942 12.753 Atomic orbital electron populations 1.21748 0.92390 1.01577 1.03436 1.20048 0.97101 0.96204 0.91005 1.21738 1.00378 0.93466 1.03431 1.23753 0.91099 0.89846 0.94032 1.68156 1.23173 1.32727 0.98932 1.23300 0.90955 0.91015 0.97817 1.22119 0.98531 0.96901 0.98527 1.17955 0.95765 0.94104 0.89103 1.21273 1.05817 1.18164 1.11863 0.93191 1.25801 0.97229 0.99437 0.96134 1.70044 1.26455 1.41127 1.18653 0.85499 0.78844 0.78553 0.78486 1.19704 1.20368 1.19463 1.23270 0.95065 0.97545 0.87325 1.68249 1.12243 1.09062 1.34757 0.94055 0.88923 0.92526 0.88366 0.89015 0.93675 0.92488 0.80875 0.96337 0.96415 0.92355 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.09 71.98 0.65 -2.33 16 2 C -0.02 -0.60 3.25 -11.54 -0.04 -0.63 16 3 C -0.13 -2.83 9.09 71.98 0.65 -2.18 16 4 C 0.28 9.75 6.34 138.75 0.88 10.63 16 5 N -0.52 -18.92 9.81 -187.84 -1.84 -20.76 16 6 C 0.13 5.27 11.01 84.70 0.93 6.21 16 7 C -0.16 -6.69 5.10 -19.69 -0.10 -6.79 16 8 C 0.07 3.44 5.15 29.10 0.15 3.59 16 9 C -0.53 -29.02 9.09 25.60 0.23 -28.78 16 10 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 11 C 0.01 0.73 5.46 84.65 0.46 1.19 16 12 N -0.92 -53.15 13.29 21.45 0.28 -52.86 16 13 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 C 0.13 5.28 11.01 84.70 0.93 6.21 16 18 N -0.53 -19.94 10.31 -187.84 -1.94 -21.87 16 19 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 20 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.06 1.38 8.01 -2.39 -0.02 1.36 16 22 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.33 8.02 -2.39 -0.02 1.31 16 26 H 0.17 6.22 8.06 -2.91 -0.02 6.20 16 27 H 0.02 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.02 0.92 8.10 -2.39 -0.02 0.90 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.17 6.28 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -60.88 263.92 4.40 -56.48 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.11 Total: 6.96 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 4.76 Total: -12.89 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -3.49 Total: -95.50 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -60.88 4.40 -56.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.121 kcal (2) G-P(sol) polarization free energy of solvation -60.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds