Wall clock time and date at job start Thu Apr 9 2020 14:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28479 * 124.85845 * 2 1 4 4 C 1.32756 * 109.93021 * 179.97438 * 3 2 1 5 5 C 1.41431 * 126.56602 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99626 * 180.02562 * 5 4 3 7 7 C 1.39852 * 120.00090 * 0.03080 * 5 4 3 8 8 N 1.30895 * 119.99722 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99978 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47563 * 59.99378 * 9 7 5 11 11 H 1.48497 * 109.47475 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46895 * 299.99681 * 9 7 5 13 13 C 1.42230 * 106.86476 * 359.78528 * 4 3 2 14 14 C 1.35072 * 105.54683 * 0.33989 * 13 4 3 15 15 C 1.50699 * 126.31173 * 179.97438 * 14 13 4 16 16 C 1.53782 * 113.61510 * 34.68880 * 15 14 13 17 17 C 1.53781 * 87.08260 * 220.02009 * 16 15 14 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 15 19 19 H 1.08997 * 109.47204 * 270.04614 * 1 2 3 20 20 H 1.09003 * 109.46804 * 30.05027 * 1 2 3 21 21 H 1.09004 * 109.46673 * 150.04482 * 1 2 3 22 22 H 0.97001 * 119.99382 * 180.02562 * 8 7 5 23 23 H 1.07992 * 127.23056 * 180.26588 * 13 4 3 24 24 H 1.09002 * 112.84923 * 165.88739 * 15 14 13 25 25 H 1.09001 * 113.61250 * 105.46827 * 16 15 14 26 26 H 1.08997 * 113.61225 * 334.56668 * 16 15 14 27 27 H 1.09002 * 113.61445 * 139.98212 * 17 16 15 28 28 H 1.09002 * 113.61408 * 270.79943 * 17 16 15 29 29 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 30 30 H 1.09000 * 113.61138 * 220.06261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1993 1.0543 0.0000 4 6 3.4821 0.7123 0.0006 5 6 4.5888 1.5928 0.0002 6 1 5.5937 1.1970 0.0003 7 6 4.3820 2.9759 -0.0001 8 7 3.1641 3.4555 -0.0007 9 14 5.8438 4.1389 0.0002 10 1 6.6675 3.8990 -1.2119 11 1 5.3596 5.5427 -0.0009 12 1 6.6665 3.8995 1.2131 13 6 3.5301 -0.7092 0.0060 14 6 2.2418 -1.1150 0.0007 15 6 1.7555 -2.5414 0.0028 16 6 2.6491 -3.4957 0.8124 17 6 2.4267 -4.5270 -0.3064 18 6 2.1712 -3.3379 -1.2475 19 1 -0.3633 0.0008 1.0276 20 1 -0.3633 0.8896 -0.5146 21 1 -0.3633 -0.8904 -0.5132 22 1 3.0207 4.4149 -0.0013 23 1 4.4116 -1.3331 0.0119 24 1 0.6956 -2.6268 0.2425 25 1 2.2187 -3.7902 1.7696 26 1 3.6825 -3.1596 0.8973 27 1 3.3204 -5.0984 -0.5575 28 1 1.5510 -5.1574 -0.1515 29 1 3.0737 -2.9586 -1.7267 30 1 1.3555 -3.5052 -1.9509 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262616.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:41 Heat of formation + Delta-G solvation = 88.153132 kcal Electronic energy + Delta-G solvation = -13226.278079 eV Core-core repulsion = 11023.722195 eV Total energy + Delta-G solvation = -2202.555883 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.51132 -37.94873 -33.41491 -31.43148 -29.26595 -27.16586 -25.28506 -24.68328 -23.74749 -20.25772 -19.32489 -18.22932 -16.63998 -15.51840 -14.93598 -14.54919 -14.49459 -13.65016 -13.07000 -12.43437 -12.18570 -12.07011 -11.75711 -11.49319 -11.43571 -10.97453 -10.94544 -10.56245 -10.16103 -10.11195 -10.08298 -9.70719 -9.03081 -8.21958 -7.30955 -7.12986 -6.15867 -4.00959 3.24776 3.29706 3.32990 3.49894 4.19232 4.31225 4.52894 4.99530 5.01238 5.05867 5.38383 5.54253 5.77863 5.79874 5.82557 5.96693 6.01582 6.09570 6.12196 6.13672 6.26573 6.48658 6.74114 6.88305 7.40640 7.53003 7.58650 7.97065 8.48640 8.82281 9.15196 9.40453 10.45339 10.82809 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049852 B = 0.008782 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.529195 B = 3187.471845 C = 3609.685765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.336 5.336 3 N -0.328 5.328 4 C 0.189 3.811 5 C -0.451 4.451 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.786 5.786 9 Si 0.902 3.098 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.270 1.270 13 C -0.282 4.282 14 C -0.005 4.005 15 C -0.036 4.036 16 C -0.125 4.125 17 C -0.144 4.144 18 C -0.128 4.128 19 H 0.054 0.946 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.266 0.734 23 H 0.119 0.881 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -10.199 -0.339 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.120 5.120 3 N -0.159 5.159 4 C 0.040 3.960 5 C -0.490 4.490 6 H 0.094 0.906 7 C -0.145 4.145 8 N -0.415 5.415 9 Si 0.728 3.272 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.195 1.195 13 C -0.313 4.313 14 C -0.131 4.131 15 C -0.056 4.056 16 C -0.163 4.163 17 C -0.182 4.182 18 C -0.166 4.166 19 H 0.073 0.927 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.137 0.863 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.646 -9.074 -0.339 10.200 hybrid contribution 1.111 -0.049 0.028 1.112 sum -3.535 -9.123 -0.311 9.789 Atomic orbital electron populations 1.21446 0.77788 1.02522 1.01478 1.45383 1.05418 1.03548 1.57650 1.74733 1.03049 1.07354 1.30794 1.19267 0.90694 0.89641 0.96399 1.18462 0.91666 0.89635 1.49233 0.90635 1.25724 0.95976 0.98844 0.93976 1.69975 1.20622 1.13119 1.37806 0.86503 0.82313 0.79132 0.79262 1.19550 1.20894 1.19542 1.21251 0.94198 0.96082 1.19749 1.20792 0.91999 0.88478 1.11799 1.20844 0.98402 0.89216 0.97135 1.22945 1.01009 0.95580 0.96808 1.22829 1.01241 0.96397 0.97698 1.23002 1.01774 0.95763 0.96050 0.92705 0.90367 0.91585 0.92368 0.86339 0.90011 0.92032 0.89345 0.91687 0.90754 0.89561 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.01 10.97 59.85 0.66 2.67 16 2 N -0.34 -8.17 3.72 -63.72 -0.24 -8.40 16 3 N -0.33 -9.59 10.24 32.34 0.33 -9.25 16 4 C 0.19 5.58 6.78 -84.72 -0.57 5.01 16 5 C -0.45 -13.30 9.42 -37.76 -0.36 -13.66 16 6 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 7 C 0.07 2.04 5.49 -17.35 -0.10 1.95 16 8 N -0.79 -23.36 11.97 55.54 0.67 -22.70 16 9 Si 0.90 20.80 29.56 -169.99 -5.02 15.78 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C -0.28 -7.11 10.08 -39.18 -0.39 -7.51 16 14 C -0.01 -0.12 6.19 -81.92 -0.51 -0.63 16 15 C -0.04 -0.60 3.86 -90.86 -0.35 -0.95 16 16 C -0.13 -1.84 7.55 -25.92 -0.20 -2.04 16 17 C -0.14 -1.78 8.08 -25.92 -0.21 -1.98 16 18 C -0.13 -1.87 7.63 -25.82 -0.20 -2.07 16 19 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 20 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 21 H 0.07 0.97 7.29 -51.93 -0.38 0.59 16 22 H 0.27 7.29 8.30 -40.82 -0.34 6.95 16 23 H 0.12 2.73 7.47 -52.49 -0.39 2.34 16 24 H 0.08 1.23 7.27 -51.93 -0.38 0.85 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.41 6.96 -51.93 -0.36 1.04 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 254.89 15.07 3.84 3.84 Total: -1.00 -33.33 254.89 -6.66 -39.99 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.01 Total: -0.04 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -2.22 Total: -19.21 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.76 Total: -40.35 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.33 -6.66 -39.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262616.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.144 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds