Wall clock time and date at job start Thu Apr 9 2020 14:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28479 * 124.85845 * 2 1 4 4 C 1.32756 * 109.93021 * 179.97438 * 3 2 1 5 5 C 1.41431 * 126.56602 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99626 * 180.02562 * 5 4 3 7 7 C 1.39852 * 120.00090 * 0.03080 * 5 4 3 8 8 N 1.30895 * 119.99722 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99978 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47563 * 59.99378 * 9 7 5 11 11 H 1.48497 * 109.47475 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46895 * 299.99681 * 9 7 5 13 13 C 1.42230 * 106.86476 * 359.78528 * 4 3 2 14 14 C 1.35072 * 105.54683 * 0.33989 * 13 4 3 15 15 C 1.50699 * 126.31173 * 179.97438 * 14 13 4 16 16 C 1.53782 * 113.61510 * 34.68880 * 15 14 13 17 17 C 1.53781 * 87.08260 * 220.02009 * 16 15 14 18 18 C 1.53786 * 87.17350 * 25.39213 * 17 16 15 19 19 H 1.08997 * 109.47204 * 270.04614 * 1 2 3 20 20 H 1.09003 * 109.46804 * 30.05027 * 1 2 3 21 21 H 1.09004 * 109.46673 * 150.04482 * 1 2 3 22 22 H 0.97001 * 119.99382 * 180.02562 * 8 7 5 23 23 H 1.07992 * 127.23056 * 180.26588 * 13 4 3 24 24 H 1.09002 * 112.84923 * 165.88739 * 15 14 13 25 25 H 1.09001 * 113.61250 * 105.46827 * 16 15 14 26 26 H 1.08997 * 113.61225 * 334.56668 * 16 15 14 27 27 H 1.09002 * 113.61445 * 139.98212 * 17 16 15 28 28 H 1.09002 * 113.61408 * 270.79943 * 17 16 15 29 29 H 1.08993 * 113.61491 * 89.15923 * 18 17 16 30 30 H 1.09000 * 113.61138 * 220.06261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1993 1.0543 0.0000 4 6 3.4821 0.7123 0.0006 5 6 4.5888 1.5928 0.0002 6 1 5.5937 1.1970 0.0003 7 6 4.3820 2.9759 -0.0001 8 7 3.1641 3.4555 -0.0007 9 14 5.8438 4.1389 0.0002 10 1 6.6675 3.8990 -1.2119 11 1 5.3596 5.5427 -0.0009 12 1 6.6665 3.8995 1.2131 13 6 3.5301 -0.7092 0.0060 14 6 2.2418 -1.1150 0.0007 15 6 1.7555 -2.5414 0.0028 16 6 2.6491 -3.4957 0.8124 17 6 2.4267 -4.5270 -0.3064 18 6 2.1712 -3.3379 -1.2475 19 1 -0.3633 0.0008 1.0276 20 1 -0.3633 0.8896 -0.5146 21 1 -0.3633 -0.8904 -0.5132 22 1 3.0207 4.4149 -0.0013 23 1 4.4116 -1.3331 0.0119 24 1 0.6956 -2.6268 0.2425 25 1 2.2187 -3.7902 1.7696 26 1 3.6825 -3.1596 0.8973 27 1 3.3204 -5.0984 -0.5575 28 1 1.5510 -5.1574 -0.1515 29 1 3.0737 -2.9586 -1.7267 30 1 1.3555 -3.5052 -1.9509 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262616.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:40 Heat of formation + Delta-G solvation = 66.739272 kcal Electronic energy + Delta-G solvation = -13227.206653 eV Core-core repulsion = 11023.722195 eV Total energy + Delta-G solvation = -2203.484458 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.37449 -39.21126 -35.46912 -33.31345 -31.01816 -29.12304 -26.46125 -26.23906 -25.45122 -21.99632 -21.12385 -19.72119 -18.37153 -17.46302 -16.41325 -16.27091 -16.06411 -15.20512 -14.75214 -14.26966 -13.55615 -13.32652 -13.25070 -13.07728 -13.05434 -12.69596 -12.56971 -12.46818 -11.89943 -11.48020 -11.29459 -11.22953 -11.03332 -10.23449 -9.32602 -9.05219 -8.26688 -6.20099 1.40875 1.42610 1.53910 1.72112 2.34070 2.42913 2.56471 3.64530 3.81504 3.86145 3.91106 4.13019 4.17217 4.41080 4.50732 4.65039 4.76173 4.88233 4.93975 4.99546 5.12856 5.15630 5.31225 5.37642 5.50293 5.54811 5.81157 5.94337 6.45883 6.88727 7.03608 7.26469 8.41795 8.73902 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.049852 B = 0.008782 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.529195 B = 3187.471845 C = 3609.685765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.347 5.347 3 N -0.371 5.371 4 C 0.147 3.853 5 C -0.491 4.491 6 H 0.077 0.923 7 C 0.020 3.980 8 N -0.827 5.827 9 Si 0.985 3.015 10 H -0.262 1.262 11 H -0.274 1.274 12 H -0.262 1.262 13 C -0.316 4.316 14 C 0.020 3.980 15 C -0.046 4.046 16 C -0.129 4.129 17 C -0.121 4.121 18 C -0.128 4.128 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.108 0.892 22 H 0.270 0.730 23 H 0.127 0.873 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -11.915 -0.350 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.131 5.131 3 N -0.204 5.204 4 C -0.003 4.003 5 C -0.529 4.529 6 H 0.095 0.905 7 C -0.193 4.193 8 N -0.457 5.457 9 Si 0.806 3.194 10 H -0.186 1.186 11 H -0.198 1.198 12 H -0.186 1.186 13 C -0.346 4.346 14 C -0.107 4.107 15 C -0.066 4.066 16 C -0.167 4.167 17 C -0.159 4.159 18 C -0.166 4.166 19 H 0.091 0.909 20 H 0.091 0.909 21 H 0.126 0.874 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.127 0.873 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.277 -10.807 -0.350 12.032 hybrid contribution 1.183 0.374 0.035 1.241 sum -4.095 -10.433 -0.316 11.212 Atomic orbital electron populations 1.21852 0.74564 1.04386 1.03258 1.45869 1.07446 1.03178 1.56613 1.74578 1.03592 1.10085 1.32101 1.19760 0.91210 0.91776 0.97583 1.18879 0.92103 0.91075 1.50883 0.90506 1.26715 0.99413 1.00307 0.92870 1.70116 1.23155 1.13639 1.38811 0.85240 0.77971 0.76477 0.79698 1.18602 1.19850 1.18599 1.21411 0.96208 0.94717 1.22274 1.21540 0.90952 0.90668 1.07515 1.21240 1.00225 0.85532 0.99563 1.22941 0.99493 0.95841 0.98395 1.22769 1.03003 0.95412 0.94669 1.22964 1.01453 0.96327 0.95867 0.90868 0.90929 0.87374 0.92054 0.85555 0.87277 0.90391 0.91410 0.90517 0.87848 0.91874 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.48 10.97 127.77 1.40 4.88 16 2 N -0.35 -16.88 3.72 -355.50 -1.32 -18.20 16 3 N -0.37 -22.44 10.24 -51.60 -0.53 -22.97 16 4 C 0.15 9.03 6.78 40.78 0.28 9.30 16 5 C -0.49 -30.23 9.42 23.45 0.22 -30.01 16 6 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 7 C 0.02 1.17 5.49 85.22 0.47 1.64 16 8 N -0.83 -50.84 11.97 21.81 0.26 -50.57 16 9 Si 0.98 43.72 29.56 68.60 2.03 45.75 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 13 C -0.32 -16.46 10.08 22.53 0.23 -16.23 16 14 C 0.02 0.89 6.19 41.20 0.26 1.14 16 15 C -0.05 -1.40 3.86 -10.95 -0.04 -1.44 16 16 C -0.13 -3.43 7.55 31.12 0.24 -3.19 16 17 C -0.12 -2.48 8.08 31.12 0.25 -2.23 16 18 C -0.13 -3.37 7.63 31.18 0.24 -3.13 16 19 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 20 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 21 H 0.11 2.79 7.29 -2.38 -0.02 2.78 16 22 H 0.27 15.22 8.30 -92.71 -0.77 14.45 16 23 H 0.13 6.09 7.47 -2.91 -0.02 6.07 16 24 H 0.11 2.78 7.27 -2.39 -0.02 2.76 16 25 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.07 2.09 6.96 -2.39 -0.02 2.08 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -76.15 254.89 5.09 -71.06 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.12 Total: 14.21 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 3.53 Total: -39.28 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -1.59 Total: -91.74 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.15 5.09 -71.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262616.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.803 kcal (2) G-P(sol) polarization free energy of solvation -76.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds