Wall clock time and date at job start Thu Apr 9 2020 14:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47015 * 2 1 4 4 N 1.36424 * 126.40622 * 264.68587 * 3 2 1 5 5 H 0.96995 * 126.55220 * 0.02562 * 4 3 2 6 6 C 1.37541 * 106.88572 * 179.88440 * 4 3 2 7 7 C 1.40003 * 125.96246 * 180.11072 * 6 4 3 8 8 H 1.08000 * 119.99799 * 354.55858 * 7 6 4 9 9 C 1.40234 * 120.00242 * 174.55808 * 7 6 4 10 10 N 1.30689 * 119.99582 * 6.03612 * 9 7 6 11 11 Si 1.86796 * 120.00084 * 186.03590 * 9 7 6 12 12 H 1.48501 * 109.47239 * 94.98312 * 11 9 7 13 13 H 1.48497 * 109.47103 * 214.98320 * 11 9 7 14 14 H 1.48498 * 109.46999 * 334.97922 * 11 9 7 15 15 N 1.32982 * 108.07637 * 0.38370 * 6 4 3 16 16 C 1.32756 * 109.22316 * 359.75981 * 15 6 4 17 17 C 1.50698 * 125.68805 * 180.02562 * 16 15 6 18 18 C 1.53005 * 117.50196 * 8.72645 * 17 16 15 19 19 C 1.52996 * 117.50280 * 300.06378 * 17 16 15 20 20 H 1.09000 * 109.47363 * 60.00054 * 1 2 3 21 21 H 1.08993 * 109.47528 * 299.99655 * 1 2 3 22 22 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47363 * 119.99946 * 2 1 3 24 24 H 1.09006 * 109.47368 * 240.00630 * 2 1 3 25 25 H 0.97010 * 119.99521 * 180.02562 * 10 9 7 26 26 H 1.09003 * 115.55000 * 154.39560 * 17 16 15 27 27 H 1.09001 * 117.49644 * 0.02562 * 18 17 16 28 28 H 1.09000 * 117.49585 * 145.01851 * 18 17 16 29 29 H 1.09005 * 117.50270 * 214.97501 * 19 17 16 30 30 H 1.09003 * 117.50117 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3980 2.1503 -1.0933 5 1 2.3839 1.8538 -2.0167 6 6 2.7875 3.3876 -0.6359 7 6 3.2383 4.4517 -1.4261 8 1 3.3874 4.3115 -2.4866 9 6 3.4964 5.6996 -0.8407 10 7 3.4304 5.8387 0.4571 11 14 3.9346 7.1629 -1.9159 12 1 2.7085 7.9490 -2.2058 13 1 4.9170 8.0216 -1.2068 14 1 4.5267 6.6815 -3.1898 15 7 2.6667 3.3947 0.6884 16 6 2.2116 2.2148 1.0922 17 6 1.9383 1.8199 2.5206 18 6 2.0083 2.9187 3.5832 19 6 3.1116 1.8606 3.5017 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 3.6085 6.7021 0.8620 26 1 1.1951 1.0344 2.6573 27 1 2.2517 3.9272 3.2489 28 1 1.3114 2.8557 4.4189 29 1 3.1400 1.1022 4.2841 30 1 4.0813 2.1726 3.1140 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266135.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:46 Heat of formation + Delta-G solvation = 58.742929 kcal Electronic energy + Delta-G solvation = -13250.649691 eV Core-core repulsion = 11046.818485 eV Total energy + Delta-G solvation = -2203.831206 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94998 -36.01441 -33.62609 -32.57519 -30.26032 -28.08689 -25.25356 -22.91213 -21.52506 -21.10972 -19.81001 -18.03565 -16.89257 -15.47471 -14.95640 -14.43533 -13.66589 -13.42155 -13.22871 -12.76340 -12.50093 -11.64498 -11.34802 -11.15029 -11.03918 -10.83302 -10.67673 -10.53197 -10.31316 -10.07760 -9.89525 -9.54179 -9.12170 -7.91935 -7.70374 -6.78538 -6.35692 -4.20225 3.07060 3.18410 3.20951 3.58665 4.06930 4.47829 4.85808 5.00941 5.58234 5.64989 5.68067 5.73225 5.84040 5.93516 5.99539 6.23233 6.28582 6.34925 6.44070 6.56612 6.61536 6.72979 6.95808 7.17634 7.25132 7.42818 7.74913 8.11949 8.33215 8.63895 9.03183 9.47989 10.30089 10.57801 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033936 B = 0.010815 C = 0.008628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.889271 B = 2588.460540 C = 3244.453591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.023 4.023 3 C -0.137 4.137 4 N -0.618 5.618 5 H 0.392 0.608 6 C 0.376 3.624 7 C -0.468 4.468 8 H 0.076 0.924 9 C 0.084 3.916 10 N -0.743 5.743 11 Si 0.909 3.091 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.266 1.266 15 N -0.505 5.505 16 C 0.047 3.953 17 C -0.060 4.060 18 C -0.168 4.168 19 C -0.177 4.177 20 H 0.046 0.954 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.270 0.730 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -5.731 0.736 6.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 C -0.250 4.250 4 N -0.226 5.226 5 H 0.226 0.774 6 C 0.131 3.869 7 C -0.507 4.507 8 H 0.094 0.906 9 C -0.140 4.140 10 N -0.368 5.368 11 Si 0.734 3.266 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.190 1.190 15 N -0.227 5.227 16 C -0.087 4.087 17 C -0.079 4.079 18 C -0.205 4.205 19 C -0.215 4.215 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.230 -4.962 1.529 5.651 hybrid contribution -0.027 -0.152 -1.533 1.541 sum -2.257 -5.114 -0.004 5.589 Atomic orbital electron populations 1.21782 0.96600 0.99761 1.01873 1.19533 0.94341 0.91716 1.00604 1.20086 1.20824 0.95777 0.88275 1.43226 1.58150 1.14084 1.07114 0.77400 1.20092 0.94658 0.83097 0.89045 1.18069 1.44922 0.93175 0.94565 0.90594 1.25645 0.94015 0.99353 0.94966 1.70018 1.32693 1.24042 1.10009 0.86315 0.78720 0.81057 0.80526 1.19831 1.20365 1.18997 1.71076 1.25328 1.18476 1.07824 1.19498 1.05105 0.92842 0.91223 1.20047 0.99797 1.00309 0.87794 1.22855 1.00963 0.97053 0.99626 1.22844 0.95043 1.01995 1.01600 0.93462 0.92713 0.93843 0.91817 0.93498 0.91895 0.88719 0.87166 0.90418 0.90189 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.89 37.16 0.37 -1.87 16 2 C -0.02 -0.41 6.20 -27.89 -0.17 -0.58 16 3 C -0.14 -3.11 6.51 -81.28 -0.53 -3.64 16 4 N -0.62 -14.74 6.26 -8.20 -0.05 -14.79 16 5 H 0.39 8.06 8.96 -40.82 -0.37 7.69 16 6 C 0.38 10.47 7.61 -155.60 -1.18 9.29 16 7 C -0.47 -12.80 9.45 -38.17 -0.36 -13.16 16 8 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 9 C 0.08 2.22 5.49 -17.29 -0.09 2.12 16 10 N -0.74 -20.75 11.92 55.56 0.66 -20.09 16 11 Si 0.91 19.41 29.57 -169.99 -5.03 14.38 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 N -0.51 -14.39 9.00 -8.95 -0.08 -14.47 16 16 C 0.05 1.18 6.60 -82.92 -0.55 0.63 16 17 C -0.06 -1.25 5.89 -91.77 -0.54 -1.79 16 18 C -0.17 -3.33 10.14 -26.69 -0.27 -3.60 16 19 C -0.18 -3.37 10.24 -26.69 -0.27 -3.64 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.06 8.03 -51.93 -0.42 0.64 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 26 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 27 H 0.11 2.57 7.89 -51.93 -0.41 2.16 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 LS Contribution 262.20 15.07 3.95 3.95 Total: -1.00 -30.57 262.20 -8.27 -38.84 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.12 Total: 8.43 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -3.61 Total: -16.24 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.53 Total: -49.36 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.57 -8.27 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266135.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.579 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds