Wall clock time and date at job start Thu Apr 9 2020 14:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47015 * 2 1 4 4 N 1.36424 * 126.40622 * 264.68587 * 3 2 1 5 5 H 0.96995 * 126.55220 * 0.02562 * 4 3 2 6 6 C 1.37541 * 106.88572 * 179.88440 * 4 3 2 7 7 C 1.40003 * 125.96246 * 180.11072 * 6 4 3 8 8 H 1.08000 * 119.99799 * 354.55858 * 7 6 4 9 9 C 1.40234 * 120.00242 * 174.55808 * 7 6 4 10 10 N 1.30689 * 119.99582 * 6.03612 * 9 7 6 11 11 Si 1.86796 * 120.00084 * 186.03590 * 9 7 6 12 12 H 1.48501 * 109.47239 * 94.98312 * 11 9 7 13 13 H 1.48497 * 109.47103 * 214.98320 * 11 9 7 14 14 H 1.48498 * 109.46999 * 334.97922 * 11 9 7 15 15 N 1.32982 * 108.07637 * 0.38370 * 6 4 3 16 16 C 1.32756 * 109.22316 * 359.75981 * 15 6 4 17 17 C 1.50698 * 125.68805 * 180.02562 * 16 15 6 18 18 C 1.53005 * 117.50196 * 8.72645 * 17 16 15 19 19 C 1.52996 * 117.50280 * 300.06378 * 17 16 15 20 20 H 1.09000 * 109.47363 * 60.00054 * 1 2 3 21 21 H 1.08993 * 109.47528 * 299.99655 * 1 2 3 22 22 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47363 * 119.99946 * 2 1 3 24 24 H 1.09006 * 109.47368 * 240.00630 * 2 1 3 25 25 H 0.97010 * 119.99521 * 180.02562 * 10 9 7 26 26 H 1.09003 * 115.55000 * 154.39560 * 17 16 15 27 27 H 1.09001 * 117.49644 * 0.02562 * 18 17 16 28 28 H 1.09000 * 117.49585 * 145.01851 * 18 17 16 29 29 H 1.09005 * 117.50270 * 214.97501 * 19 17 16 30 30 H 1.09003 * 117.50117 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3980 2.1503 -1.0933 5 1 2.3839 1.8538 -2.0167 6 6 2.7875 3.3876 -0.6359 7 6 3.2383 4.4517 -1.4261 8 1 3.3874 4.3115 -2.4866 9 6 3.4964 5.6996 -0.8407 10 7 3.4304 5.8387 0.4571 11 14 3.9346 7.1629 -1.9159 12 1 2.7085 7.9490 -2.2058 13 1 4.9170 8.0216 -1.2068 14 1 4.5267 6.6815 -3.1898 15 7 2.6667 3.3947 0.6884 16 6 2.2116 2.2148 1.0922 17 6 1.9383 1.8199 2.5206 18 6 2.0083 2.9187 3.5832 19 6 3.1116 1.8606 3.5017 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8901 25 1 3.6085 6.7021 0.8620 26 1 1.1951 1.0344 2.6573 27 1 2.2517 3.9272 3.2489 28 1 1.3114 2.8557 4.4189 29 1 3.1400 1.1022 4.2841 30 1 4.0813 2.1726 3.1140 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266135.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:46 Heat of formation + Delta-G solvation = 40.194823 kcal Electronic energy + Delta-G solvation = -13251.453997 eV Core-core repulsion = 11046.818485 eV Total energy + Delta-G solvation = -2204.635512 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.84081 -37.62408 -35.45592 -34.21156 -32.17903 -29.96292 -27.06404 -24.44786 -23.08695 -22.84901 -21.69356 -19.87062 -18.76761 -17.39638 -16.59832 -16.10696 -15.32832 -14.96252 -14.89075 -14.46647 -14.22112 -13.24812 -13.00957 -12.86022 -12.72146 -12.33456 -12.23693 -12.08182 -11.93391 -11.80441 -11.54854 -11.11446 -11.03837 -9.86361 -9.65401 -8.69624 -8.31238 -6.21972 1.35877 1.42394 1.56864 1.78934 2.27569 2.61928 3.06092 3.30095 3.71121 4.05417 4.20724 4.31949 4.34820 4.37674 4.54108 4.67539 4.86753 4.96436 5.06173 5.10812 5.12255 5.27370 5.34815 5.45980 5.51750 5.59657 5.85404 6.20039 6.36512 6.75608 7.05903 7.56685 8.36293 8.64879 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.033936 B = 0.010815 C = 0.008628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.889271 B = 2588.460540 C = 3244.453591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.022 4.022 3 C -0.120 4.120 4 N -0.613 5.613 5 H 0.406 0.594 6 C 0.334 3.666 7 C -0.499 4.499 8 H 0.085 0.915 9 C 0.033 3.967 10 N -0.790 5.790 11 Si 0.992 3.008 12 H -0.267 1.267 13 H -0.273 1.273 14 H -0.255 1.255 15 N -0.543 5.543 16 C 0.001 3.999 17 C -0.071 4.071 18 C -0.170 4.170 19 C -0.160 4.160 20 H 0.036 0.964 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.273 0.727 26 H 0.126 0.874 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 -7.291 0.605 7.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 C -0.233 4.233 4 N -0.220 5.220 5 H 0.242 0.758 6 C 0.087 3.913 7 C -0.539 4.539 8 H 0.103 0.897 9 C -0.186 4.186 10 N -0.416 5.416 11 Si 0.813 3.187 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.179 1.179 15 N -0.265 5.265 16 C -0.131 4.131 17 C -0.089 4.089 18 C -0.207 4.207 19 C -0.198 4.198 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.912 -6.559 1.387 7.309 hybrid contribution 0.145 0.186 -1.480 1.498 sum -2.767 -6.373 -0.093 6.948 Atomic orbital electron populations 1.21701 0.94707 1.01918 1.00982 1.19719 0.95774 0.88265 1.02328 1.20995 1.17583 0.97531 0.87192 1.43277 1.57191 1.13300 1.08274 0.75820 1.20444 0.96591 0.84691 0.89550 1.18490 1.46108 0.94151 0.95142 0.89715 1.26678 0.93368 1.02224 0.96332 1.70166 1.34330 1.24967 1.12140 0.85069 0.78500 0.76624 0.78551 1.19255 1.19772 1.17875 1.70983 1.26149 1.20791 1.08610 1.20257 1.06391 0.92455 0.93960 1.20241 1.01456 1.01339 0.85909 1.22780 1.02510 0.94801 1.00620 1.22844 0.92899 1.02270 1.01753 0.94522 0.93514 0.90132 0.90123 0.91703 0.91670 0.85584 0.91742 0.86662 0.85731 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.89 71.98 0.71 -3.08 16 2 C -0.02 -0.71 6.20 29.85 0.18 -0.53 16 3 C -0.12 -5.35 6.51 41.37 0.27 -5.08 16 4 N -0.61 -29.36 6.26 -179.87 -1.13 -30.49 16 5 H 0.41 16.57 8.96 -92.71 -0.83 15.74 16 6 C 0.33 19.23 7.61 133.59 1.02 20.24 16 7 C -0.50 -28.19 9.45 23.18 0.22 -27.97 16 8 H 0.08 4.40 7.86 -2.91 -0.02 4.38 16 9 C 0.03 1.78 5.49 85.35 0.47 2.25 16 10 N -0.79 -46.15 11.92 21.88 0.26 -45.89 16 11 Si 0.99 40.70 29.57 68.60 2.03 42.72 16 12 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 13 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 14 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 15 N -0.54 -32.12 9.00 -182.22 -1.64 -33.76 16 16 C 0.00 0.07 6.60 41.95 0.28 0.35 16 17 C -0.07 -2.84 5.89 -11.54 -0.07 -2.91 16 18 C -0.17 -6.69 10.14 30.62 0.31 -6.38 16 19 C -0.16 -5.89 10.24 30.62 0.31 -5.57 16 20 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.08 2.37 8.03 -2.39 -0.02 2.35 16 24 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.27 14.61 8.29 -92.70 -0.77 13.84 16 26 H 0.13 4.21 8.10 -2.39 -0.02 4.19 16 27 H 0.06 3.15 7.89 -2.39 -0.02 3.13 16 28 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 29 H 0.12 3.45 8.14 -2.38 -0.02 3.43 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -69.74 262.20 3.53 -66.21 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.30 Total: 29.87 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.70 Total: -28.67 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -2.50 Total: -110.14 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -69.74 3.53 -66.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266135.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.406 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds