Wall clock time and date at job start Thu Apr 9 2020 14:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47165 * 2 1 4 4 N 1.31798 * 119.12159 * 89.99743 * 3 2 1 5 5 C 1.32331 * 120.81652 * 180.02562 * 4 3 2 6 6 C 1.38595 * 119.10482 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.80163 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47363 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47154 * 120.00101 * 7 6 5 10 10 C 1.50696 * 109.47371 * 240.00430 * 7 6 5 11 11 H 1.07999 * 120.00390 * 354.35389 * 10 7 6 12 12 C 1.37873 * 119.99859 * 174.36222 * 10 7 6 13 13 N 1.31519 * 120.00085 * 156.97499 * 12 10 7 14 14 Si 1.86801 * 120.00069 * 336.97026 * 12 10 7 15 15 H 1.48502 * 109.47375 * 180.02562 * 14 12 10 16 16 H 1.48494 * 109.47312 * 300.00509 * 14 12 10 17 17 H 1.48499 * 109.46957 * 60.00404 * 14 12 10 18 18 C 1.38603 * 118.40205 * 0.27720 * 6 5 4 19 19 N 1.31792 * 119.11846 * 270.02221 * 3 2 1 20 20 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46813 * 299.99827 * 1 2 3 22 22 H 1.08995 * 109.47027 * 60.00487 * 1 2 3 23 23 H 1.08999 * 109.47554 * 240.00166 * 2 1 3 24 24 H 1.09003 * 109.47275 * 119.99656 * 2 1 3 25 25 H 1.07997 * 120.44678 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.47164 * 53.27509 * 9 7 6 27 27 H 1.08994 * 109.47265 * 173.27482 * 9 7 6 28 28 H 1.09002 * 109.47128 * 293.28233 * 9 7 6 29 29 H 0.96998 * 120.00009 * 354.92649 * 13 12 10 30 30 H 1.07990 * 120.45165 * 179.72518 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2461 2.0256 1.1514 5 6 2.6866 3.2729 1.1905 6 6 2.9232 3.9419 0.0000 7 6 3.4256 5.3627 0.0000 8 1 3.5471 5.7052 1.0276 9 6 4.7734 5.4271 -0.7213 10 6 2.4330 6.2465 -0.7104 11 1 1.5748 5.8102 -1.1997 12 6 2.6205 7.6122 -0.7357 13 7 2.0650 8.3348 -1.6839 14 14 3.6635 8.4362 0.5768 15 1 3.7080 9.8995 0.3273 16 1 3.0699 8.1803 1.9137 17 1 5.0413 7.8841 0.5330 18 6 2.6816 3.2746 -1.1905 19 7 2.2457 2.0256 -1.1514 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.8601 3.7625 2.1373 26 1 4.6793 4.9743 -1.7083 27 1 5.0797 6.4678 -0.8267 28 1 5.5213 4.8849 -0.1427 29 1 1.5851 7.9005 -2.4064 30 1 2.8505 3.7659 -2.1373 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261271960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:51 Heat of formation + Delta-G solvation = 23.623370 kcal Electronic energy + Delta-G solvation = -13042.070038 eV Core-core repulsion = 10836.715934 eV Total energy + Delta-G solvation = -2205.354104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 206.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55213 -35.53514 -33.40896 -33.10984 -31.69292 -28.77418 -25.05145 -24.40401 -24.03728 -21.80629 -19.84237 -17.80086 -16.78637 -16.34426 -14.69638 -14.35696 -13.91455 -13.64294 -13.35260 -12.90611 -12.82585 -12.35826 -12.19122 -11.76090 -11.45275 -11.32553 -10.98651 -10.60276 -10.33968 -10.22028 -9.95119 -9.75176 -9.18844 -8.69185 -8.50708 -8.26644 -6.57201 -4.19698 1.54947 1.63946 3.32842 3.37754 3.54780 4.26338 4.36893 4.41505 4.64955 5.08640 5.28690 5.34328 5.37768 5.45165 5.61793 5.74679 5.90328 6.03580 6.07007 6.26656 6.29951 6.49431 6.55831 6.62805 6.96588 7.03882 7.28052 7.56202 7.92690 8.26093 8.62012 8.76050 9.46336 10.78724 Molecular weight = 206.11amu Principal moments of inertia in cm(-1) A = 0.054147 B = 0.008246 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.990938 B = 3394.662013 C = 3505.079706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.279 3.721 4 N -0.520 5.520 5 C 0.125 3.875 6 C -0.127 4.127 7 C 0.056 3.944 8 H 0.033 0.967 9 C -0.141 4.141 10 C -0.607 4.607 11 H 0.058 0.942 12 C 0.041 3.959 13 N -0.893 5.893 14 Si 1.036 2.964 15 H -0.284 1.284 16 H -0.282 1.282 17 H -0.275 1.275 18 C 0.150 3.850 19 N -0.521 5.521 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.161 0.839 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.024 0.976 29 H 0.271 0.729 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -10.983 3.828 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C 0.011 3.989 4 N -0.234 5.234 5 C -0.040 4.040 6 C -0.131 4.131 7 C 0.036 3.964 8 H 0.051 0.949 9 C -0.199 4.199 10 C -0.644 4.644 11 H 0.076 0.924 12 C -0.166 4.166 13 N -0.525 5.525 14 Si 0.864 3.136 15 H -0.210 1.210 16 H -0.209 1.209 17 H -0.201 1.201 18 C -0.016 4.016 19 N -0.234 5.234 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.178 0.822 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.994 -10.437 4.355 11.483 hybrid contribution -0.297 -0.415 -0.580 0.773 sum 1.697 -10.852 3.775 11.614 Atomic orbital electron populations 1.21678 0.94204 1.01766 1.02420 1.20186 0.96336 0.88828 1.03276 1.22915 0.94689 0.97240 0.84036 1.68090 1.13865 1.10872 1.30565 1.23111 0.92779 0.89476 0.98600 1.22073 0.97288 0.99470 0.94298 1.18064 0.94098 0.87094 0.97163 0.94914 1.22186 0.96881 1.01195 0.99645 1.21831 1.10671 0.92962 1.38912 0.92386 1.25734 0.97666 0.94295 0.98873 1.70850 1.32603 1.39402 1.09621 0.84142 0.76672 0.76512 0.76291 1.20979 1.20850 1.20132 1.23080 0.90698 0.88611 0.99217 1.68167 1.13806 1.11015 1.30436 0.91987 0.92475 0.92428 0.89882 0.89917 0.82184 0.93633 0.92394 0.95693 0.91935 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.39 16 2 C -0.05 -0.64 6.37 -27.88 -0.18 -0.82 16 3 C 0.28 5.03 6.90 -157.19 -1.08 3.95 16 4 N -0.52 -9.73 10.33 -10.72 -0.11 -9.84 16 5 C 0.13 2.38 10.96 -17.20 -0.19 2.19 16 6 C -0.13 -2.63 4.76 -104.36 -0.50 -3.13 16 7 C 0.06 1.25 2.10 -92.92 -0.20 1.06 16 8 H 0.03 0.72 6.52 -51.93 -0.34 0.38 16 9 C -0.14 -2.92 8.84 37.16 0.33 -2.59 16 10 C -0.61 -16.10 8.50 -34.44 -0.29 -16.39 16 11 H 0.06 1.68 7.79 -52.49 -0.41 1.28 16 12 C 0.04 1.13 5.20 -17.82 -0.09 1.04 16 13 N -0.89 -26.26 13.70 55.43 0.76 -25.50 16 14 Si 1.04 23.80 26.44 -169.99 -4.49 19.30 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -5.81 6.14 56.52 0.35 -5.46 16 18 C 0.15 3.03 9.92 -17.20 -0.17 2.86 16 19 N -0.52 -10.11 10.33 -10.72 -0.11 -10.22 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.16 2.63 8.01 -52.49 -0.42 2.21 16 26 H 0.04 0.91 7.28 -51.93 -0.38 0.53 16 27 H 0.06 1.24 5.46 -51.93 -0.28 0.96 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 30 H 0.17 3.27 7.64 -52.49 -0.40 2.86 16 LS Contribution 254.87 15.07 3.84 3.84 Total: -1.00 -29.17 254.87 -6.09 -35.26 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -3.97 Total: 0.37 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.00 Total: -13.21 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.54 Total: -45.56 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.49 Total: 19.30 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.17 -6.09 -35.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.884 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds