Wall clock time and date at job start Thu Apr 9 2020 14:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39939 * 120.00032 * 2 1 4 4 C 1.38869 * 120.01551 * 0.27149 * 3 2 1 5 5 C 1.38107 * 119.97712 * 180.28230 * 4 3 2 6 6 C 1.38708 * 120.01978 * 359.44465 * 5 4 3 7 7 O 1.35999 * 119.98081 * 180.30371 * 6 5 4 8 8 C 1.42895 * 116.99908 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47346 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99850 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00354 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99973 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00094 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46905 * 60.00532 * 13 11 9 15 15 H 1.48503 * 109.46891 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47142 * 300.00365 * 13 11 9 17 17 C 1.38703 * 120.03548 * 0.27995 * 6 5 4 18 18 C 1.38112 * 120.02059 * 359.97438 * 17 6 5 19 19 H 1.08996 * 109.47409 * 60.00521 * 1 2 3 20 20 H 1.09007 * 109.47164 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47181 * 299.99649 * 1 2 3 22 22 H 0.97000 * 119.99932 * 179.97438 * 2 1 3 23 23 H 1.07998 * 120.00986 * 0.02562 * 4 3 2 24 24 H 1.08002 * 119.99286 * 179.72912 * 5 4 3 25 25 H 1.09003 * 109.47134 * 299.99744 * 8 7 6 26 26 H 1.08996 * 109.47717 * 59.99736 * 8 7 6 27 27 H 0.96998 * 119.99700 * 179.97438 * 12 11 9 28 28 H 1.07997 * 119.98646 * 180.02562 * 17 6 5 29 29 H 1.08000 * 120.00547 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1647 1.2119 0.0000 4 6 1.4707 2.4147 0.0057 5 6 2.1620 3.6103 -0.0002 6 6 3.5491 3.6099 -0.0002 7 8 4.2291 4.7877 0.0003 8 6 5.6561 4.7129 -0.0003 9 6 6.2321 6.1055 -0.0003 10 1 5.5742 6.9621 -0.0004 11 6 7.5989 6.2862 -0.0003 12 7 8.4001 5.2432 -0.0008 13 14 8.3129 8.0124 -0.0011 14 1 7.8552 8.7379 1.2111 15 1 9.7959 7.9347 -0.0016 16 1 7.8552 8.7368 -1.2139 17 6 4.2430 2.4089 -0.0001 18 6 3.5533 1.2124 0.0005 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.9500 -0.8400 0.0004 23 1 0.3908 2.4152 0.0105 24 1 1.6225 4.5459 -0.0002 25 1 5.9923 4.1803 0.8893 26 1 5.9918 4.1813 -0.8906 27 1 9.3617 5.3704 -0.0011 28 1 5.3230 2.4095 0.0004 29 1 4.0938 0.2774 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038057235.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:42 Heat of formation + Delta-G solvation = -16.779357 kcal Electronic energy + Delta-G solvation = -12710.831610 eV Core-core repulsion = 10406.006851 eV Total energy + Delta-G solvation = -2304.824760 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.33161 -37.22035 -34.40601 -32.79080 -30.60851 -28.69884 -27.43618 -25.27560 -23.13148 -21.99947 -20.44754 -17.48166 -16.88145 -16.24135 -15.57868 -14.57345 -14.47945 -14.15782 -14.03407 -13.80757 -12.99144 -12.61114 -12.32742 -12.02658 -11.80430 -11.45153 -11.01314 -10.94825 -10.42451 -10.34568 -10.07970 -9.19870 -9.01041 -8.52677 -8.43331 -6.60321 -6.19193 -4.22310 1.83993 2.21121 3.29450 3.31957 3.35719 3.69117 4.25320 4.39305 4.70810 5.10858 5.17709 5.35273 5.39594 5.45231 5.65524 5.86455 5.88381 6.15633 6.47189 6.54792 6.73813 6.89965 7.11984 7.23162 7.25212 7.61834 7.74798 7.93229 8.04578 8.62583 8.93515 9.42751 10.92152 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.094688 B = 0.005863 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.636343 B = 4774.883984 C = 5050.073556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.764 5.764 3 C 0.152 3.848 4 C -0.157 4.157 5 C -0.126 4.126 6 C 0.103 3.897 7 O -0.323 6.323 8 C 0.194 3.806 9 C -0.523 4.523 10 H 0.069 0.931 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.913 3.087 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.166 4.166 18 C -0.151 4.151 19 H 0.046 0.954 20 H 0.065 0.935 21 H 0.046 0.954 22 H 0.395 0.605 23 H 0.118 0.882 24 H 0.124 0.876 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.267 0.733 28 H 0.133 0.867 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 -9.162 0.006 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.398 5.398 3 C 0.053 3.947 4 C -0.179 4.179 5 C -0.145 4.145 6 C 0.055 3.945 7 O -0.236 6.236 8 C 0.122 3.878 9 C -0.561 4.561 10 H 0.087 0.913 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.740 3.260 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.185 4.185 18 C -0.174 4.174 19 H 0.065 0.935 20 H 0.084 0.916 21 H 0.064 0.936 22 H 0.228 0.772 23 H 0.136 0.864 24 H 0.142 0.858 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.910 -8.934 0.006 14.888 hybrid contribution 0.869 0.241 0.000 0.902 sum -11.041 -8.693 0.006 14.053 Atomic orbital electron populations 1.21383 0.81073 1.01455 1.00617 1.44216 1.04905 1.05063 1.85581 1.17618 0.90953 0.86073 1.00091 1.20306 0.98782 0.90514 1.08306 1.20187 0.91433 0.97909 1.04988 1.19069 0.91793 0.86189 0.97446 1.86102 1.24075 1.26220 1.87250 1.20548 0.71777 0.98926 0.96586 1.20970 0.91514 0.91636 1.51935 0.91259 1.24938 0.96410 0.98128 0.94800 1.69948 1.04019 1.29684 1.49786 0.86313 0.77583 0.83181 0.78953 1.19883 1.21042 1.19889 1.21242 1.00790 0.91653 1.04854 1.20343 0.91769 0.97797 1.07449 0.93550 0.91595 0.93562 0.77208 0.86367 0.85799 0.96348 0.96352 0.92366 0.84966 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 9.94 59.85 0.60 1.50 15 2 N -0.76 -9.00 5.90 -65.34 -0.39 -9.38 15 3 C 0.15 2.34 6.66 -83.70 -0.56 1.78 15 4 C -0.16 -2.47 9.31 -39.40 -0.37 -2.84 15 5 C -0.13 -2.31 9.98 -39.46 -0.39 -2.70 15 6 C 0.10 2.23 6.69 -39.24 -0.26 1.97 15 7 O -0.32 -8.20 10.12 -19.74 -0.20 -8.40 15 8 C 0.19 5.36 4.49 36.01 0.16 5.52 15 9 C -0.52 -15.32 9.43 -34.44 -0.32 -15.65 15 10 H 0.07 2.00 7.81 -52.48 -0.41 1.59 15 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 12 N -0.90 -26.44 13.29 55.43 0.74 -25.70 15 13 Si 0.91 21.65 29.54 -169.99 -5.02 16.62 15 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 H -0.27 -6.37 7.11 56.52 0.40 -5.96 15 17 C -0.17 -3.32 9.03 -39.46 -0.36 -3.68 15 18 C -0.15 -2.53 9.89 -39.40 -0.39 -2.92 15 19 H 0.05 0.42 7.96 -51.93 -0.41 0.01 15 20 H 0.07 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.05 0.42 7.94 -51.93 -0.41 0.01 15 22 H 0.39 3.91 8.84 -40.82 -0.36 3.55 15 23 H 0.12 1.54 6.73 -52.49 -0.35 1.19 15 24 H 0.12 2.09 8.06 -52.49 -0.42 1.66 15 25 H 0.02 0.53 7.66 -51.93 -0.40 0.13 15 26 H 0.02 0.53 7.66 -51.93 -0.40 0.13 15 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 28 H 0.13 2.77 6.29 -52.49 -0.33 2.44 15 29 H 0.12 1.64 8.06 -52.49 -0.42 1.21 15 LS Contribution 254.51 15.07 3.84 3.84 Total: -1.00 -31.12 254.51 -6.50 -37.62 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.48 Total: 0.84 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -1.99 Total: -15.43 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.35 Total: -35.09 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.20 Total: -8.40 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.12 -6.50 -37.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038057235.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.841 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds