Wall clock time and date at job start Thu Apr 9 2020 14:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39939 * 120.00032 * 2 1 4 4 C 1.38869 * 120.01551 * 0.27149 * 3 2 1 5 5 C 1.38107 * 119.97712 * 180.28230 * 4 3 2 6 6 C 1.38708 * 120.01978 * 359.44465 * 5 4 3 7 7 O 1.35999 * 119.98081 * 180.30371 * 6 5 4 8 8 C 1.42895 * 116.99908 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47346 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99850 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00354 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99973 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00094 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46905 * 60.00532 * 13 11 9 15 15 H 1.48503 * 109.46891 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47142 * 300.00365 * 13 11 9 17 17 C 1.38703 * 120.03548 * 0.27995 * 6 5 4 18 18 C 1.38112 * 120.02059 * 359.97438 * 17 6 5 19 19 H 1.08996 * 109.47409 * 60.00521 * 1 2 3 20 20 H 1.09007 * 109.47164 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47181 * 299.99649 * 1 2 3 22 22 H 0.97000 * 119.99932 * 179.97438 * 2 1 3 23 23 H 1.07998 * 120.00986 * 0.02562 * 4 3 2 24 24 H 1.08002 * 119.99286 * 179.72912 * 5 4 3 25 25 H 1.09003 * 109.47134 * 299.99744 * 8 7 6 26 26 H 1.08996 * 109.47717 * 59.99736 * 8 7 6 27 27 H 0.96998 * 119.99700 * 179.97438 * 12 11 9 28 28 H 1.07997 * 119.98646 * 180.02562 * 17 6 5 29 29 H 1.08000 * 120.00547 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1647 1.2119 0.0000 4 6 1.4707 2.4147 0.0057 5 6 2.1620 3.6103 -0.0002 6 6 3.5491 3.6099 -0.0002 7 8 4.2291 4.7877 0.0003 8 6 5.6561 4.7129 -0.0003 9 6 6.2321 6.1055 -0.0003 10 1 5.5742 6.9621 -0.0004 11 6 7.5989 6.2862 -0.0003 12 7 8.4001 5.2432 -0.0008 13 14 8.3129 8.0124 -0.0011 14 1 7.8552 8.7379 1.2111 15 1 9.7959 7.9347 -0.0016 16 1 7.8552 8.7368 -1.2139 17 6 4.2430 2.4089 -0.0001 18 6 3.5533 1.2124 0.0005 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.9500 -0.8400 0.0004 23 1 0.3908 2.4152 0.0105 24 1 1.6225 4.5459 -0.0002 25 1 5.9923 4.1803 0.8893 26 1 5.9918 4.1813 -0.8906 27 1 9.3617 5.3704 -0.0011 28 1 5.3230 2.4095 0.0004 29 1 4.0938 0.2774 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038057235.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:41 Heat of formation + Delta-G solvation = -37.780394 kcal Electronic energy + Delta-G solvation = -12711.742283 eV Core-core repulsion = 10406.006851 eV Total energy + Delta-G solvation = -2305.735433 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.83853 -38.77741 -35.72939 -34.90045 -32.02363 -30.28512 -29.19495 -26.47637 -25.01765 -23.47421 -21.91989 -19.15433 -18.56741 -17.88427 -17.11836 -16.36231 -16.36067 -15.56802 -15.22417 -14.98741 -14.48241 -14.17221 -13.84297 -13.50251 -13.13116 -12.91641 -12.81991 -12.75330 -12.24808 -12.08065 -11.75358 -11.28829 -10.76261 -10.25860 -9.90982 -8.38100 -7.94169 -6.52630 0.43765 0.76229 1.39111 1.44577 1.52988 2.29833 2.68269 2.91763 2.94660 2.97720 3.98194 4.05951 4.41282 4.48607 4.49140 4.74317 4.77298 4.82636 5.00186 5.00811 5.12463 5.19179 5.38773 5.48065 5.62939 5.79898 5.88591 6.44194 6.56194 6.90437 6.97395 7.20526 8.74216 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.094688 B = 0.005863 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.636343 B = 4774.883984 C = 5050.073556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.753 5.753 3 C 0.170 3.830 4 C -0.153 4.153 5 C -0.122 4.122 6 C 0.048 3.952 7 O -0.344 6.344 8 C 0.215 3.785 9 C -0.559 4.559 10 H 0.066 0.934 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.990 3.010 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.264 1.264 17 C -0.179 4.179 18 C -0.157 4.157 19 H 0.051 0.949 20 H 0.096 0.904 21 H 0.051 0.949 22 H 0.406 0.594 23 H 0.154 0.846 24 H 0.135 0.865 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.274 0.726 28 H 0.107 0.893 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 -9.830 0.009 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.386 5.386 3 C 0.068 3.932 4 C -0.176 4.176 5 C -0.141 4.141 6 C 0.001 3.999 7 O -0.259 6.259 8 C 0.141 3.859 9 C -0.596 4.596 10 H 0.084 0.916 11 C -0.190 4.190 12 N -0.565 5.565 13 Si 0.811 3.189 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.189 1.189 17 C -0.198 4.198 18 C -0.180 4.180 19 H 0.069 0.931 20 H 0.115 0.885 21 H 0.069 0.931 22 H 0.241 0.759 23 H 0.172 0.828 24 H 0.153 0.847 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.623 -9.666 0.009 16.704 hybrid contribution 1.205 0.212 -0.001 1.224 sum -12.418 -9.454 0.007 15.607 Atomic orbital electron populations 1.21663 0.78863 1.03808 1.01009 1.44396 1.06346 1.04135 1.83731 1.17760 0.90602 0.87615 0.97254 1.20639 1.00403 0.89473 1.07040 1.20425 0.89985 0.99696 1.03969 1.19481 0.93111 0.85442 1.01867 1.86008 1.22499 1.28658 1.88759 1.20063 0.73542 0.97870 0.94412 1.21332 0.92554 0.92160 1.53583 0.91555 1.26010 0.96383 1.03147 0.93440 1.70063 1.04617 1.32261 1.49600 0.85140 0.77088 0.77110 0.79514 1.18841 1.19701 1.18854 1.21163 0.99811 0.92817 1.06056 1.20527 0.92801 0.97365 1.07298 0.93071 0.88509 0.93074 0.75881 0.82826 0.84719 0.98576 0.98584 0.91737 0.87464 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 9.94 127.77 1.27 2.49 15 2 N -0.75 -14.78 5.90 -360.65 -2.13 -16.90 15 3 C 0.17 4.81 6.66 38.15 0.25 5.06 15 4 C -0.15 -4.45 9.31 22.39 0.21 -4.24 15 5 C -0.12 -4.42 9.98 22.35 0.22 -4.20 15 6 C 0.05 2.15 6.69 22.49 0.15 2.30 15 7 O -0.34 -18.61 10.12 -93.54 -0.95 -19.56 15 8 C 0.21 12.66 4.49 71.24 0.32 12.98 15 9 C -0.56 -34.15 9.43 25.60 0.24 -33.91 15 10 H 0.07 3.97 7.81 -2.91 -0.02 3.95 15 11 C 0.01 0.55 5.46 84.65 0.46 1.01 15 12 N -0.93 -56.13 13.29 21.45 0.28 -55.84 15 13 Si 0.99 44.59 29.54 68.60 2.03 46.61 15 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 17 C -0.18 -7.52 9.03 22.35 0.20 -7.32 15 18 C -0.16 -5.16 9.89 22.39 0.22 -4.94 15 19 H 0.05 0.69 7.96 -2.39 -0.02 0.67 15 20 H 0.10 0.76 8.14 -2.38 -0.02 0.74 15 21 H 0.05 0.69 7.94 -2.39 -0.02 0.67 15 22 H 0.41 6.42 8.84 -92.71 -0.82 5.60 15 23 H 0.15 3.35 6.73 -2.91 -0.02 3.34 15 24 H 0.13 4.48 8.06 -2.91 -0.02 4.45 15 25 H 0.00 -0.22 7.66 -2.39 -0.02 -0.23 15 26 H 0.00 -0.22 7.66 -2.39 -0.02 -0.24 15 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 28 H 0.11 4.93 6.29 -2.91 -0.02 4.91 15 29 H 0.14 3.77 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -69.81 254.51 3.12 -66.69 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.33 Total: 9.77 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.55 Total: -30.77 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -1.84 Total: -72.75 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.95 Total: -19.56 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.81 3.12 -66.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038057235.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.912 kcal (2) G-P(sol) polarization free energy of solvation -69.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds