Wall clock time and date at job start Thu Apr 9 2020 14:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38390 * 120.00164 * 2 1 4 4 N 1.32126 * 119.99710 * 179.97438 * 3 2 1 5 5 C 1.32157 * 120.00139 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00179 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 275.00285 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47043 * 89.99858 * 13 11 9 15 15 H 1.48494 * 109.47326 * 209.99769 * 13 11 9 16 16 H 1.48497 * 109.47436 * 330.00047 * 13 11 9 17 17 C 1.38346 * 120.00253 * 0.25866 * 5 4 3 18 18 N 1.32126 * 119.99895 * 179.97438 * 2 1 3 19 19 H 1.09002 * 109.47778 * 89.99273 * 1 2 3 20 20 H 1.08996 * 109.47628 * 209.99601 * 1 2 3 21 21 H 1.09003 * 109.47131 * 329.99917 * 1 2 3 22 22 H 1.08001 * 120.00417 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.47558 * 155.00449 * 6 5 4 24 24 H 1.08998 * 109.47216 * 35.00111 * 6 5 4 25 25 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 26 26 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 27 27 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 28 28 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 29 29 H 1.07997 * 120.00477 * 179.72155 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0538 0.0015 6 6 5.6879 0.0537 0.0015 7 7 6.1775 0.1732 -1.3783 8 6 7.6460 0.1758 -1.4174 9 6 8.1103 0.3002 -2.8457 10 1 7.3868 0.3698 -3.6446 11 6 9.4587 0.3240 -3.1328 12 7 10.3396 0.2387 -2.1600 13 14 10.0341 0.4774 -4.9032 14 1 10.1877 1.9130 -5.2512 15 1 11.3395 -0.2126 -5.0611 16 1 9.0325 -0.1459 -5.8051 17 6 3.4892 -1.1443 -0.0033 18 7 2.1675 -1.1443 0.0005 19 1 -0.3635 0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5137 21 1 -0.3633 0.8900 0.5139 22 1 1.6590 2.1338 0.0004 23 1 6.0512 -0.8773 0.4366 24 1 6.0513 0.8960 0.5902 25 1 5.8021 0.9963 -1.8252 26 1 8.0234 1.0188 -0.8384 27 1 8.0225 -0.7545 -0.9923 28 1 11.2882 0.2558 -2.3620 29 1 4.0291 -2.0796 -0.0070 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061321278.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:51 Heat of formation + Delta-G solvation = 13.598816 kcal Electronic energy + Delta-G solvation = -12566.046715 eV Core-core repulsion = 10294.832002 eV Total energy + Delta-G solvation = -2271.214712 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.10115 -37.46375 -35.51424 -34.59724 -33.59404 -30.48848 -28.18916 -25.70956 -25.55089 -23.57212 -22.70243 -18.79556 -18.71179 -17.29700 -16.80384 -16.54264 -16.27901 -15.84574 -15.05712 -14.81632 -14.08344 -13.67129 -13.60575 -13.37239 -13.14544 -12.97473 -12.67062 -12.59841 -12.52462 -12.12702 -12.02004 -11.37604 -10.68496 -10.05526 -10.02877 -9.22878 -8.24238 -6.35365 -0.21243 0.14429 1.40926 1.42476 1.54365 2.38826 2.64183 3.05336 3.09290 3.24209 3.51584 3.70901 3.81638 4.11684 4.21080 4.52832 4.62675 4.67931 4.80777 4.89735 5.04177 5.14297 5.22851 5.48342 5.57589 5.97057 6.28088 6.37408 6.58056 6.82084 6.83119 7.35075 8.87310 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.067212 B = 0.005541 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.494923 B = 5052.427916 C = 5177.748008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.069 3.931 3 C 0.050 3.950 4 N -0.459 5.459 5 C 0.069 3.931 6 C 0.113 3.887 7 N -0.680 5.680 8 C 0.209 3.791 9 C -0.538 4.538 10 H 0.061 0.939 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.974 3.026 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.266 1.266 17 C 0.067 3.933 18 N -0.459 5.459 19 H 0.093 0.907 20 H 0.079 0.921 21 H 0.107 0.893 22 H 0.202 0.798 23 H 0.095 0.905 24 H 0.035 0.965 25 H 0.332 0.668 26 H -0.035 1.035 27 H 0.011 0.989 28 H 0.266 0.734 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.785 0.578 4.591 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 C -0.112 4.112 4 N -0.175 5.175 5 C -0.070 4.070 6 C -0.017 4.017 7 N -0.310 5.310 8 C 0.081 3.919 9 C -0.577 4.577 10 H 0.079 0.921 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.798 3.202 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.092 4.092 18 N -0.175 5.175 19 H 0.111 0.889 20 H 0.098 0.902 21 H 0.125 0.875 22 H 0.219 0.781 23 H 0.113 0.887 24 H 0.053 0.947 25 H 0.149 0.851 26 H -0.018 1.018 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.610 -0.128 4.518 18.180 hybrid contribution 1.089 0.914 -0.285 1.450 sum -16.521 0.786 4.233 17.073 Atomic orbital electron populations 1.20797 0.84677 1.05200 1.04543 1.23033 1.00388 0.89208 0.94648 1.24210 0.89720 1.00827 0.96419 1.68224 1.10342 1.30003 1.08905 1.22056 0.97340 0.90215 0.97357 1.20710 0.87583 1.02031 0.91387 1.60658 1.10113 1.45522 1.14756 1.19257 0.82521 0.94069 0.96044 1.21500 0.92206 1.50549 0.93410 0.92054 1.25933 0.96706 0.94535 1.02369 1.70081 1.01979 1.51114 1.33968 0.85320 0.77630 0.78463 0.78805 1.19720 1.20453 1.19041 1.23723 0.90539 0.99594 0.95346 1.68394 1.08557 1.30445 1.10124 0.88857 0.90208 0.87451 0.78117 0.88681 0.94732 0.85104 1.01782 0.97067 0.92492 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.19 71.23 0.73 -0.47 15 2 C 0.07 1.54 6.79 42.55 0.29 1.83 15 3 C 0.05 1.16 10.88 84.68 0.92 2.08 15 4 N -0.46 -14.44 10.42 -183.29 -1.91 -16.35 15 5 C 0.07 2.27 6.30 42.53 0.27 2.54 15 6 C 0.11 4.19 6.01 85.55 0.51 4.70 15 7 N -0.68 -30.47 6.48 -521.98 -3.38 -33.85 15 8 C 0.21 11.31 5.44 85.56 0.47 11.77 15 9 C -0.54 -31.21 9.32 25.60 0.24 -30.98 15 10 H 0.06 3.49 7.81 -2.91 -0.02 3.46 15 11 C 0.00 0.18 5.46 84.66 0.46 0.64 15 12 N -0.93 -56.36 13.29 21.45 0.28 -56.08 15 13 Si 0.97 44.65 29.54 68.60 2.03 46.67 15 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 17 C 0.07 1.98 10.86 84.67 0.92 2.90 15 18 N -0.46 -12.74 10.42 -183.29 -1.91 -14.65 15 19 H 0.09 1.01 8.14 -2.39 -0.02 0.99 15 20 H 0.08 1.02 8.14 -2.39 -0.02 1.00 15 21 H 0.11 0.74 8.09 -2.39 -0.02 0.72 15 22 H 0.20 2.97 8.06 -2.91 -0.02 2.95 15 23 H 0.09 3.26 8.05 -2.39 -0.02 3.24 15 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 25 H 0.33 14.92 8.72 -89.69 -0.78 14.13 15 26 H -0.04 -2.07 8.14 -2.39 -0.02 -2.09 15 27 H 0.01 0.65 8.14 -2.39 -0.02 0.63 15 28 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 29 H 0.18 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -68.30 260.52 0.28 -68.03 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.36 Total: 11.20 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 4.80 Total: -4.98 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.92 Total: -120.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.30 0.28 -68.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061321278.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.626 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds