Wall clock time and date at job start Thu Apr 9 2020 14:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 115.54849 * 2 1 4 4 N 1.30254 * 125.61980 * 325.29838 * 3 2 1 5 5 C 1.34475 * 108.70210 * 179.83977 * 4 3 2 6 6 C 1.50707 * 126.16897 * 180.16983 * 5 4 3 7 7 C 1.50695 * 109.46993 * 265.27702 * 6 5 4 8 8 H 1.07999 * 120.00281 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99554 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99740 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00339 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47043 * 89.99819 * 11 9 7 13 13 H 1.48500 * 109.47483 * 209.99565 * 11 9 7 14 14 H 1.48495 * 109.47264 * 330.00109 * 11 9 7 15 15 C 1.34332 * 107.66985 * 0.42479 * 5 4 3 16 16 O 1.33967 * 125.61961 * 145.61095 * 3 2 1 17 17 C 1.53001 * 117.50064 * 214.29321 * 2 1 3 18 18 C 1.52994 * 117.50137 * 145.67124 * 2 1 3 19 19 H 1.09002 * 109.47153 * 274.32881 * 1 2 3 20 20 H 1.09001 * 109.46832 * 154.33072 * 1 2 3 21 21 H 1.09004 * 109.47261 * 34.33054 * 1 2 3 22 22 H 1.09003 * 109.46658 * 25.27598 * 6 5 4 23 23 H 1.09003 * 109.46928 * 145.27586 * 6 5 4 24 24 H 0.97001 * 120.00003 * 180.02562 * 10 9 7 25 25 H 1.08003 * 126.44989 * 179.76700 * 15 5 4 26 26 H 1.08997 * 117.49845 * 359.97438 * 17 2 1 27 27 H 1.08999 * 117.50024 * 145.02000 * 17 2 1 28 28 H 1.09008 * 117.50231 * 214.98172 * 18 2 1 29 29 H 1.09000 * 117.49792 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 7 1.7217 2.4195 -0.6028 5 6 2.5650 3.4424 -0.3771 6 6 2.4108 4.8517 -0.8884 7 6 3.1869 5.0086 -2.1705 8 1 3.7372 4.1717 -2.5745 9 6 3.1945 6.2206 -2.8278 10 7 3.8714 6.3574 -3.9471 11 14 2.2433 7.6682 -2.1287 12 1 3.1204 8.4410 -1.2128 13 1 1.7908 8.5456 -3.2381 14 1 1.0625 7.1692 -1.3792 15 6 3.5726 2.9803 0.3816 16 8 3.3272 1.6760 0.6151 17 6 2.2365 -1.1212 -0.7646 18 6 2.2365 -1.1207 0.7653 19 1 -0.3633 0.0776 1.0247 20 1 -0.3633 -0.9263 -0.4452 21 1 -0.3634 0.8487 -0.5796 22 1 1.3566 5.0573 -1.0743 23 1 2.7920 5.5517 -0.1449 24 1 3.8771 7.2102 -4.4093 25 1 4.4199 3.5475 0.7378 26 1 1.6113 -1.8591 -1.2673 27 1 3.1715 -0.8755 -1.2680 28 1 3.1716 -0.8747 1.2686 29 1 1.6112 -1.8578 1.2692 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261324882.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:54 Heat of formation + Delta-G solvation = 39.345143 kcal Electronic energy + Delta-G solvation = -13010.202886 eV Core-core repulsion = 10707.811868 eV Total energy + Delta-G solvation = -2302.391019 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.66758 -37.84257 -34.67473 -32.82255 -30.70727 -28.57545 -27.61071 -23.22496 -22.95118 -22.49864 -20.28142 -19.06885 -16.86566 -16.64097 -15.87935 -15.33952 -14.55435 -14.20178 -13.55586 -13.11343 -12.86444 -12.38038 -12.17858 -11.93333 -11.63966 -11.61830 -10.98097 -10.65666 -10.54832 -10.33884 -10.23944 -9.77965 -9.66773 -9.32510 -8.58177 -7.89782 -6.07073 -4.06306 2.05113 3.17478 3.29070 3.36487 3.37702 3.41560 3.79694 4.34077 4.42008 4.59732 4.83483 5.01972 5.24837 5.52475 5.58134 5.69656 5.78658 5.81688 5.88578 5.90922 6.03412 6.26073 6.41865 6.55136 6.90425 7.12815 7.21739 7.67055 8.49034 8.49256 8.96507 9.52124 11.06043 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.055205 B = 0.007293 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.076578 B = 3838.273673 C = 3872.987654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.034 4.034 3 C 0.199 3.801 4 N -0.466 5.466 5 C 0.042 3.958 6 C 0.056 3.944 7 C -0.513 4.513 8 H 0.071 0.929 9 C 0.070 3.930 10 N -0.900 5.900 11 Si 0.879 3.121 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.263 1.263 15 C -0.102 4.102 16 O -0.213 6.213 17 C -0.156 4.156 18 C -0.165 4.165 19 H 0.062 0.938 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.037 0.963 23 H 0.031 0.969 24 H 0.265 0.735 25 H 0.212 0.788 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 -12.119 9.855 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.036 4.036 3 C -0.008 4.008 4 N -0.196 5.196 5 C -0.078 4.078 6 C 0.018 3.982 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.188 1.188 15 C -0.171 4.171 16 O -0.100 6.100 17 C -0.194 4.194 18 C -0.202 4.202 19 H 0.081 0.919 20 H 0.085 0.915 21 H 0.099 0.901 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.228 0.772 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.577 -11.989 9.384 15.898 hybrid contribution 0.448 0.993 0.522 1.208 sum -4.129 -10.996 9.906 15.365 Atomic orbital electron populations 1.21277 0.89213 1.03348 1.02564 1.19158 0.94609 0.81862 1.07938 1.24770 0.84558 0.96212 0.95213 1.70283 1.30418 0.98479 1.20454 1.22218 0.91128 0.97763 0.96663 1.18178 0.98785 0.84586 0.96658 1.20884 1.30275 0.98469 1.05483 0.91047 1.24961 0.95024 0.98543 0.94640 1.69902 1.41742 1.25383 1.16785 0.86789 0.81113 0.82552 0.79005 1.20104 1.21123 1.18792 1.24685 1.03931 0.80967 1.07498 1.84284 1.37952 1.27554 1.60243 1.23239 1.02654 0.99002 0.94503 1.23153 1.02681 0.99612 0.94798 0.91947 0.91456 0.90150 0.94443 0.95075 0.92553 0.77174 0.87471 0.88286 0.88066 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.83 37.16 0.37 -0.93 15 2 C -0.03 -0.49 2.65 -155.66 -0.41 -0.90 15 3 C 0.20 3.79 7.51 -12.95 -0.10 3.69 15 4 N -0.47 -10.51 10.87 -7.35 -0.08 -10.59 15 5 C 0.04 0.98 6.30 -82.81 -0.52 0.45 15 6 C 0.06 1.41 4.59 -29.03 -0.13 1.27 15 7 C -0.51 -15.05 9.65 -34.44 -0.33 -15.39 15 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.07 2.05 5.47 -17.82 -0.10 1.96 15 10 N -0.90 -27.94 13.96 55.43 0.77 -27.17 15 11 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 15 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 14 H -0.26 -6.26 6.54 56.52 0.37 -5.89 15 15 C -0.10 -2.05 12.08 29.35 0.35 -1.69 15 16 O -0.21 -4.07 10.43 5.35 0.06 -4.01 15 17 C -0.16 -1.84 9.88 -26.73 -0.26 -2.11 15 18 C -0.17 -1.80 9.88 -26.74 -0.26 -2.07 15 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.07 0.63 7.90 -51.93 -0.41 0.22 15 21 H 0.08 1.15 7.74 -51.93 -0.40 0.75 15 22 H 0.04 0.96 7.20 -51.93 -0.37 0.59 15 23 H 0.03 0.73 7.57 -51.93 -0.39 0.34 15 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 25 H 0.21 3.50 8.06 -52.48 -0.42 3.08 15 26 H 0.11 1.00 8.05 -51.93 -0.42 0.58 15 27 H 0.10 1.28 8.14 -51.93 -0.42 0.85 15 28 H 0.10 1.15 7.93 -51.92 -0.41 0.74 15 29 H 0.10 0.88 8.14 -51.93 -0.42 0.45 15 LS Contribution 256.48 15.07 3.87 3.87 Total: -1.00 -33.06 256.48 -5.14 -38.21 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.69 Total: -1.53 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.40 Total: -15.71 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.69 Total: -37.75 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: 0.06 Total: -4.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.06 -5.14 -38.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324882.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.551 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds