Wall clock time and date at job start Thu Apr 9 2020 14:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47272 * 57.71609 * 3 2 1 5 5 C 1.50703 * 112.84804 * 54.33252 * 4 3 2 6 6 O 1.21300 * 119.99851 * 247.23718 * 5 4 3 7 7 N 1.34773 * 120.00137 * 67.24013 * 5 4 3 8 8 C 1.37096 * 120.00199 * 185.19781 * 7 5 4 9 9 H 1.08003 * 120.00001 * 359.97438 * 8 7 5 10 10 C 1.38953 * 120.00505 * 179.97438 * 8 7 5 11 11 N 1.31406 * 120.00532 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99495 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47572 * 89.99836 * 12 10 8 14 14 H 1.48498 * 109.46956 * 209.99653 * 12 10 8 15 15 H 1.48502 * 109.47239 * 329.99731 * 12 10 8 16 16 C 1.53774 * 113.61542 * 283.02573 * 4 3 2 17 17 C 1.53775 * 87.08413 * 220.01811 * 16 4 3 18 18 C 1.53777 * 113.61550 * 185.52753 * 4 3 2 19 19 H 4.44652 * 5.63289 * 180.02562 * 4 1 2 20 20 H 1.09004 * 109.46400 * 177.71669 * 3 2 1 21 21 H 1.08996 * 109.47104 * 297.71429 * 3 2 1 22 22 H 0.97000 * 120.00131 * 5.19006 * 7 5 4 23 23 H 0.96999 * 120.00154 * 179.97438 * 11 10 8 24 24 H 1.09004 * 113.61426 * 334.57241 * 16 4 3 25 25 H 1.09000 * 113.61504 * 105.46959 * 16 4 3 26 26 H 1.08996 * 113.61601 * 270.88777 * 17 16 4 27 27 H 1.09002 * 113.61912 * 139.98063 * 17 16 4 28 28 H 1.08997 * 113.61289 * 254.53534 * 18 4 3 29 29 H 1.09004 * 113.61294 * 25.42934 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1564 -0.7696 -1.2195 5 6 2.5878 -0.2548 -2.5167 6 8 1.8291 -0.9462 -3.1630 7 7 2.9224 0.9736 -2.9588 8 6 2.3244 1.4845 -4.0817 9 1 1.5855 0.9023 -4.6124 10 6 2.6689 2.7512 -4.5373 11 7 2.0961 3.2406 -5.6139 12 14 3.9474 3.7578 -3.6199 13 1 5.2956 3.4650 -4.1694 14 1 3.6496 5.2034 -3.7833 15 1 3.9134 3.4052 -2.1777 16 6 3.0631 -2.2968 -1.0668 17 6 4.4344 -2.3711 -1.7587 18 6 4.6841 -0.9441 -1.2428 19 1 -1.0498 0.0000 -0.0003 20 1 3.0088 1.0278 -0.0409 21 1 3.0096 -0.4771 0.9097 22 1 3.5862 1.4964 -2.4824 23 1 2.3364 4.1250 -5.9316 24 1 3.0781 -2.6338 -0.0302 25 1 2.2565 -2.7452 -1.6469 26 1 4.3723 -2.4380 -2.8449 27 1 5.1025 -3.1153 -1.3253 28 1 5.1861 -0.3003 -1.9648 29 1 5.1424 -0.9111 -0.2543 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306441230.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:06 Heat of formation + Delta-G solvation = 9.263596 kcal Electronic energy + Delta-G solvation = -13512.888989 eV Core-core repulsion = 11209.193536 eV Total energy + Delta-G solvation = -2303.695452 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.49474 -38.40559 -36.04004 -34.67343 -33.74882 -30.37058 -27.48560 -26.40192 -24.74470 -22.33428 -20.90868 -19.35367 -19.01730 -17.27525 -16.97212 -16.40618 -15.92856 -15.25069 -14.98094 -14.86662 -14.60334 -14.24481 -13.81841 -13.18736 -13.01325 -12.60900 -12.44716 -12.04212 -11.98737 -11.72208 -11.54757 -11.27997 -10.98765 -10.77010 -10.35708 -10.26789 -8.44603 -6.05441 1.26345 1.32085 1.41028 1.84608 1.92414 1.99831 2.19981 2.84437 3.10583 3.44309 3.63008 3.84788 3.94391 3.99188 4.26576 4.58274 4.75729 4.82744 4.85602 4.90594 5.08497 5.11722 5.23031 5.32055 5.48096 5.60341 5.91894 6.55497 6.76541 6.84395 7.36551 7.93276 8.73344 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.031207 B = 0.011568 C = 0.010714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.012156 B = 2419.947434 C = 2612.737799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.206 4.206 3 C 0.008 3.992 4 C -0.104 4.104 5 C 0.478 3.522 6 O -0.626 6.626 7 N -0.585 5.585 8 C -0.329 4.329 9 H 0.051 0.949 10 C -0.013 4.013 11 N -0.934 5.934 12 Si 0.958 3.042 13 H -0.252 1.252 14 H -0.271 1.271 15 H -0.231 1.231 16 C -0.114 4.114 17 C -0.138 4.138 18 C -0.114 4.114 19 H 0.233 0.767 20 H 0.096 0.904 21 H 0.139 0.861 22 H 0.388 0.612 23 H 0.280 0.720 24 H 0.122 0.878 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 -4.483 15.617 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.206 4.206 3 C -0.028 4.028 4 C -0.107 4.107 5 C 0.266 3.734 6 O -0.512 6.512 7 N -0.225 5.225 8 C -0.458 4.458 9 H 0.069 0.931 10 C -0.212 4.212 11 N -0.574 5.574 12 Si 0.778 3.222 13 H -0.177 1.177 14 H -0.196 1.196 15 H -0.154 1.154 16 C -0.152 4.152 17 C -0.175 4.175 18 C -0.151 4.151 19 H 0.250 0.750 20 H 0.115 0.885 21 H 0.157 0.843 22 H 0.224 0.776 23 H 0.089 0.911 24 H 0.140 0.860 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.007 -4.766 15.023 17.678 hybrid contribution -0.375 0.839 -0.630 1.114 sum 7.633 -3.927 14.394 16.759 Atomic orbital electron populations 1.25568 0.97168 1.01147 1.00740 1.23743 0.95879 1.00417 1.00564 1.18923 0.83803 1.02103 0.98011 1.21958 0.99245 0.98292 0.91234 1.20288 0.83606 0.81540 0.87929 1.90508 1.41368 1.58577 1.60720 1.41945 1.38970 1.15892 1.25684 1.18991 1.21736 1.01034 1.04076 0.93067 1.26107 1.00428 0.97518 0.97158 1.69799 1.44272 1.18932 1.24398 0.85457 0.78467 0.78146 0.80154 1.17661 1.19633 1.15444 1.22903 0.97836 0.92105 1.02358 1.22750 0.97282 0.98299 0.99207 1.23133 0.90866 0.96747 1.04364 0.75037 0.88535 0.84324 0.77635 0.91067 0.85972 0.94056 0.93518 0.87697 0.91764 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.84 19.25 74.32 1.43 -6.41 15 2 C -0.21 -7.11 12.48 31.13 0.39 -6.72 15 3 C 0.01 0.21 5.18 28.79 0.15 0.36 15 4 C -0.10 -3.36 0.81 -52.40 -0.04 -3.40 15 5 C 0.48 22.93 5.61 87.66 0.49 23.43 15 6 O -0.63 -37.05 15.56 -3.09 -0.05 -37.10 15 7 N -0.59 -29.04 5.09 -306.98 -1.56 -30.60 15 8 C -0.33 -20.02 10.16 84.04 0.85 -19.16 15 9 H 0.05 3.71 7.40 -2.91 -0.02 3.69 15 10 C -0.01 -0.77 5.50 84.93 0.47 -0.30 15 11 N -0.93 -57.41 13.96 21.66 0.30 -57.11 15 12 Si 0.96 39.49 27.74 68.60 1.90 41.40 15 13 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 15 H -0.23 -8.06 6.52 99.48 0.65 -7.41 15 16 C -0.11 -3.33 7.00 31.12 0.22 -3.11 15 17 C -0.14 -3.59 7.80 31.12 0.24 -3.35 15 18 C -0.11 -2.68 7.22 31.12 0.22 -2.45 15 19 H 0.23 6.32 7.80 -4.43 -0.03 6.29 15 20 H 0.10 2.40 8.14 -2.38 -0.02 2.39 15 21 H 0.14 2.38 8.06 -2.39 -0.02 2.37 15 22 H 0.39 16.14 5.77 -92.71 -0.53 15.60 15 23 H 0.28 15.66 8.31 -92.71 -0.77 14.89 15 24 H 0.12 2.52 8.04 -2.38 -0.02 2.50 15 25 H 0.04 1.53 7.35 -2.39 -0.02 1.52 15 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 15 27 H 0.10 1.93 8.14 -2.39 -0.02 1.91 15 28 H 0.06 1.64 8.09 -2.39 -0.02 1.62 15 29 H 0.14 1.92 8.10 -2.39 -0.02 1.90 15 Total: -1.00 -80.66 257.43 5.57 -75.09 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.55 Total: 29.45 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 4.42 Total: -21.13 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -1.26 Total: -87.71 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.05 Total: -37.10 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.40 kcal Total: -80.66 5.57 -75.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306441230.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.354 kcal (2) G-P(sol) polarization free energy of solvation -80.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds