Wall clock time and date at job start Thu Apr 9 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46824 * 2 1 4 4 C 1.36836 * 119.99754 * 264.77658 * 3 2 1 5 5 H 1.08003 * 119.99522 * 149.15008 * 4 3 2 6 6 C 1.38752 * 119.99836 * 329.14308 * 4 3 2 7 7 N 1.31618 * 120.00242 * 332.33314 * 6 4 3 8 8 Si 1.86808 * 119.99555 * 152.33591 * 6 4 3 9 9 H 1.48501 * 109.47199 * 85.00048 * 8 6 4 10 10 H 1.48502 * 109.47019 * 204.99813 * 8 6 4 11 11 H 1.48497 * 109.47027 * 324.99797 * 8 6 4 12 12 C 1.39402 * 120.00274 * 84.78109 * 3 2 1 13 13 C 1.39082 * 120.03220 * 359.72372 * 12 3 2 14 14 C 1.38007 * 119.96512 * 179.72586 * 13 12 3 15 15 C 1.38795 * 120.03083 * 0.54491 * 14 13 12 16 16 O 1.35947 * 119.96711 * 179.70288 * 15 14 13 17 17 C 1.38801 * 120.07136 * 359.73123 * 15 14 13 18 18 C 1.37997 * 120.03272 * 359.97438 * 17 15 14 19 19 H 1.09000 * 109.47599 * 59.99845 * 1 2 3 20 20 H 1.09002 * 109.47219 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47115 * 300.00020 * 1 2 3 22 22 H 1.09000 * 109.46964 * 119.99464 * 2 1 3 23 23 H 1.08996 * 109.47254 * 239.99725 * 2 1 3 24 24 H 0.97003 * 119.99710 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.01808 * 359.97438 * 13 12 3 26 26 H 1.07995 * 119.98466 * 180.27515 * 14 13 12 27 27 H 0.96699 * 114.00225 * 270.02787 * 16 15 14 28 28 H 1.07994 * 119.97973 * 179.97438 * 17 15 14 29 29 H 1.07994 * 120.01939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3480 1.9903 -1.1801 5 1 2.2251 3.0577 -1.2897 6 6 2.8403 1.2366 -2.2359 7 7 3.4931 0.1186 -1.9984 8 14 2.5768 1.8087 -3.9946 9 1 3.6459 2.7693 -4.3682 10 1 2.6216 0.6385 -4.9078 11 1 1.2534 2.4730 -4.1059 12 6 2.1470 2.0750 1.2022 13 6 1.8067 1.4586 2.4016 14 6 1.9401 2.1448 3.5915 15 6 2.4029 3.4533 3.5906 16 8 2.5281 4.1301 4.7630 17 6 2.7375 4.0719 2.3940 18 6 2.6109 3.3863 1.2031 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 3.8369 -0.4085 -2.7365 25 1 1.4421 0.4420 2.4021 26 1 1.6802 1.6649 4.5234 27 1 1.7348 4.6188 5.0217 28 1 3.0970 5.0902 2.3949 29 1 2.8709 3.8679 0.2721 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307283737.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:09 Heat of formation + Delta-G solvation = -9.116472 kcal Electronic energy + Delta-G solvation = -13353.193363 eV Core-core repulsion = 11048.700891 eV Total energy + Delta-G solvation = -2304.492472 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.84950 -37.02501 -34.72062 -32.09073 -30.53596 -29.53969 -27.23328 -24.61182 -22.43417 -21.37391 -20.08243 -17.57772 -17.29079 -16.09395 -14.93501 -14.60769 -14.33810 -13.72191 -13.54435 -12.82683 -12.66629 -12.24694 -12.05707 -11.55875 -11.31163 -11.13620 -10.96363 -10.92009 -10.44618 -10.41752 -10.06871 -9.45327 -9.20927 -8.35776 -8.03943 -6.70121 -6.23860 -3.84561 2.40294 2.46278 3.11088 3.17056 3.22023 4.03246 4.57397 4.83619 4.99908 5.24661 5.81515 5.83567 5.97352 6.19917 6.23897 6.35740 6.53798 6.61470 6.71999 6.85937 6.99813 7.19439 7.22314 7.37467 7.49263 7.51909 7.73598 8.02156 8.52700 8.61450 9.25351 9.61830 10.53338 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.043300 B = 0.009652 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.498505 B = 2900.197026 C = 3301.865361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.438 5.438 4 C -0.316 4.316 5 H 0.092 0.908 6 C 0.034 3.966 7 N -0.855 5.855 8 Si 0.913 3.087 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.212 3.788 13 C -0.226 4.226 14 C -0.085 4.085 15 C -0.037 4.037 16 O -0.503 6.503 17 C -0.086 4.086 18 C -0.199 4.199 19 H 0.054 0.946 20 H 0.048 0.952 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.108 0.892 24 H 0.270 0.730 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.360 0.640 28 H 0.107 0.893 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 1.748 3.478 6.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.124 5.124 4 C -0.444 4.444 5 H 0.109 0.891 6 C -0.171 4.171 7 N -0.490 5.490 8 Si 0.739 3.261 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.194 1.194 12 C 0.095 3.905 13 C -0.250 4.250 14 C -0.104 4.104 15 C -0.084 4.084 16 O -0.310 6.310 17 C -0.106 4.106 18 C -0.222 4.222 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.125 0.875 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.211 0.789 28 H 0.125 0.875 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.974 1.146 3.037 5.131 hybrid contribution -0.517 0.354 -0.844 1.051 sum -4.491 1.500 2.193 5.218 Atomic orbital electron populations 1.22184 0.98241 1.00193 1.01649 1.21510 0.91811 0.84808 1.03721 1.42586 1.56571 1.10956 1.02301 1.19369 1.41949 0.94611 0.88429 0.89084 1.25283 0.94544 0.96765 1.00526 1.70107 1.30044 1.16018 1.32836 0.86175 0.79302 0.78466 0.82196 1.20097 1.20713 1.19403 1.18192 0.93658 0.92339 0.86271 1.20299 1.13281 1.00275 0.91120 1.20805 0.98465 0.94238 0.96917 1.17886 1.13523 0.92360 0.84611 1.84908 1.40198 1.67268 1.38623 1.20912 0.99190 0.98688 0.91805 1.20403 1.09747 0.94698 0.97389 0.92693 0.93284 0.93446 0.93266 0.87455 0.92021 0.87144 0.87608 0.78889 0.87498 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.12 37.16 0.38 -2.72 15 2 C 0.11 2.35 5.33 -4.04 -0.02 2.33 15 3 N -0.44 -10.75 2.68 -113.12 -0.30 -11.05 15 4 C -0.32 -8.10 8.66 -15.13 -0.13 -8.23 15 5 H 0.09 2.30 6.59 -52.48 -0.35 1.95 15 6 C 0.03 0.87 4.80 -17.45 -0.08 0.78 15 7 N -0.86 -22.46 11.48 55.49 0.64 -21.82 15 8 Si 0.91 19.45 29.63 -169.99 -5.04 14.41 15 9 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 12 C 0.21 4.97 6.50 -83.79 -0.54 4.42 15 13 C -0.23 -4.79 8.80 -39.35 -0.35 -5.14 15 14 C -0.08 -1.67 9.98 -39.46 -0.39 -2.07 15 15 C -0.04 -0.73 6.71 -39.17 -0.26 -0.99 15 16 O -0.50 -8.87 13.50 -19.57 -0.26 -9.13 15 17 C -0.09 -1.76 9.98 -39.46 -0.39 -2.15 15 18 C -0.20 -4.47 9.26 -39.35 -0.36 -4.83 15 19 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.05 0.87 7.63 -51.93 -0.40 0.47 15 22 H 0.05 1.06 6.50 -51.93 -0.34 0.72 15 23 H 0.11 2.61 5.34 -51.93 -0.28 2.33 15 24 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 25 H 0.11 2.20 6.06 -52.49 -0.32 1.88 15 26 H 0.11 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.36 4.52 9.06 45.56 0.41 4.94 15 28 H 0.11 1.93 8.06 -52.49 -0.42 1.51 15 29 H 0.12 2.71 6.31 -52.49 -0.33 2.38 15 LS Contribution 246.96 15.07 3.72 3.72 Total: -1.00 -28.01 246.96 -5.83 -33.84 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -2.42 Total: 8.62 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -2.17 Total: -18.60 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.33 Total: -32.87 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.26 Total: -9.13 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.04 Total: 14.41 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.01 -5.83 -33.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307283737.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.723 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds