Wall clock time and date at job start Thu Apr 9 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46824 * 2 1 4 4 C 1.36836 * 119.99754 * 264.77658 * 3 2 1 5 5 H 1.08003 * 119.99522 * 149.15008 * 4 3 2 6 6 C 1.38752 * 119.99836 * 329.14308 * 4 3 2 7 7 N 1.31618 * 120.00242 * 332.33314 * 6 4 3 8 8 Si 1.86808 * 119.99555 * 152.33591 * 6 4 3 9 9 H 1.48501 * 109.47199 * 85.00048 * 8 6 4 10 10 H 1.48502 * 109.47019 * 204.99813 * 8 6 4 11 11 H 1.48497 * 109.47027 * 324.99797 * 8 6 4 12 12 C 1.39402 * 120.00274 * 84.78109 * 3 2 1 13 13 C 1.39082 * 120.03220 * 359.72372 * 12 3 2 14 14 C 1.38007 * 119.96512 * 179.72586 * 13 12 3 15 15 C 1.38795 * 120.03083 * 0.54491 * 14 13 12 16 16 O 1.35947 * 119.96711 * 179.70288 * 15 14 13 17 17 C 1.38801 * 120.07136 * 359.73123 * 15 14 13 18 18 C 1.37997 * 120.03272 * 359.97438 * 17 15 14 19 19 H 1.09000 * 109.47599 * 59.99845 * 1 2 3 20 20 H 1.09002 * 109.47219 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47115 * 300.00020 * 1 2 3 22 22 H 1.09000 * 109.46964 * 119.99464 * 2 1 3 23 23 H 1.08996 * 109.47254 * 239.99725 * 2 1 3 24 24 H 0.97003 * 119.99710 * 179.97438 * 7 6 4 25 25 H 1.07996 * 120.01808 * 359.97438 * 13 12 3 26 26 H 1.07995 * 119.98466 * 180.27515 * 14 13 12 27 27 H 0.96699 * 114.00225 * 270.02787 * 16 15 14 28 28 H 1.07994 * 119.97973 * 179.97438 * 17 15 14 29 29 H 1.07994 * 120.01939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3480 1.9903 -1.1801 5 1 2.2251 3.0577 -1.2897 6 6 2.8403 1.2366 -2.2359 7 7 3.4931 0.1186 -1.9984 8 14 2.5768 1.8087 -3.9946 9 1 3.6459 2.7693 -4.3682 10 1 2.6216 0.6385 -4.9078 11 1 1.2534 2.4730 -4.1059 12 6 2.1470 2.0750 1.2022 13 6 1.8067 1.4586 2.4016 14 6 1.9401 2.1448 3.5915 15 6 2.4029 3.4533 3.5906 16 8 2.5281 4.1301 4.7630 17 6 2.7375 4.0719 2.3940 18 6 2.6109 3.3863 1.2031 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 3.8369 -0.4085 -2.7365 25 1 1.4421 0.4420 2.4021 26 1 1.6802 1.6649 4.5234 27 1 1.7348 4.6188 5.0217 28 1 3.0970 5.0902 2.3949 29 1 2.8709 3.8679 0.2721 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307283737.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:09 Heat of formation + Delta-G solvation = -26.510919 kcal Electronic energy + Delta-G solvation = -13353.947643 eV Core-core repulsion = 11048.700891 eV Total energy + Delta-G solvation = -2305.246752 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49657 -38.62457 -36.34177 -33.90226 -32.19337 -31.16254 -28.95072 -26.38207 -24.08707 -23.02949 -21.76009 -19.19324 -18.99402 -17.82628 -16.70779 -16.24430 -15.91188 -15.32942 -15.19101 -14.52642 -14.33129 -13.87114 -13.70262 -13.21987 -12.98980 -12.71223 -12.63290 -12.57665 -12.14915 -12.07348 -11.74595 -11.10602 -10.88633 -10.13715 -9.67906 -8.53848 -8.01649 -5.75314 0.74354 0.83406 1.41975 1.44282 1.54860 2.28531 2.81335 3.16323 3.24711 3.74738 4.21591 4.28226 4.35296 4.62600 4.70127 4.74798 4.93538 4.96450 5.12693 5.26227 5.36967 5.42112 5.54436 5.62678 5.80742 5.86545 6.06978 6.26384 6.76706 7.19190 7.46683 7.79943 8.68130 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.043300 B = 0.009652 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.498505 B = 2900.197026 C = 3301.865361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.106 3.894 3 N -0.462 5.462 4 C -0.333 4.333 5 H 0.083 0.917 6 C -0.006 4.006 7 N -0.890 5.890 8 Si 0.976 3.024 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.266 1.266 12 C 0.187 3.813 13 C -0.227 4.227 14 C -0.086 4.086 15 C -0.022 4.022 16 O -0.507 6.507 17 C -0.090 4.090 18 C -0.218 4.218 19 H 0.042 0.958 20 H 0.077 0.923 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.084 0.916 24 H 0.270 0.730 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.390 0.610 28 H 0.129 0.871 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 2.296 4.747 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 N -0.152 5.152 4 C -0.461 4.461 5 H 0.101 0.899 6 C -0.208 4.208 7 N -0.527 5.527 8 Si 0.800 3.200 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.191 1.191 12 C 0.073 3.927 13 C -0.251 4.251 14 C -0.105 4.105 15 C -0.069 4.069 16 O -0.317 6.317 17 C -0.109 4.109 18 C -0.242 4.242 19 H 0.061 0.939 20 H 0.096 0.904 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.139 0.861 26 H 0.154 0.846 27 H 0.245 0.755 28 H 0.147 0.853 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.731 1.725 4.350 6.655 hybrid contribution -0.273 0.298 -0.962 1.043 sum -5.005 2.023 3.388 6.373 Atomic orbital electron populations 1.22054 0.95754 1.01918 1.01192 1.21492 0.93817 0.83933 1.02556 1.42698 1.58503 1.11687 1.02282 1.19515 1.42350 0.94625 0.89622 0.89923 1.26015 0.94147 0.96962 1.03719 1.70191 1.31457 1.17304 1.33699 0.85208 0.79063 0.77936 0.77763 1.19971 1.20327 1.19066 1.18587 0.94344 0.92844 0.86932 1.20494 1.12804 1.00844 0.90912 1.21131 0.97636 0.94246 0.97533 1.18014 1.11250 0.92546 0.85076 1.84821 1.42257 1.67395 1.37209 1.21145 0.98775 0.99667 0.91311 1.20479 1.10866 0.94929 0.97939 0.93908 0.90407 0.92984 0.93151 0.89777 0.92015 0.86132 0.84609 0.75538 0.85308 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.12 71.98 0.73 -4.84 15 2 C 0.11 4.77 5.33 86.38 0.46 5.23 15 3 N -0.46 -23.10 2.68 -511.80 -1.37 -24.47 15 4 C -0.33 -17.55 8.66 84.04 0.73 -16.82 15 5 H 0.08 4.33 6.59 -2.91 -0.02 4.31 15 6 C -0.01 -0.32 4.80 84.85 0.41 0.08 15 7 N -0.89 -47.94 11.48 21.64 0.25 -47.69 15 8 Si 0.98 40.62 29.63 68.60 2.03 42.66 15 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 10 H -0.28 -11.28 7.11 99.48 0.71 -10.57 15 11 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 12 C 0.19 8.76 6.50 38.34 0.25 9.01 15 13 C -0.23 -9.29 8.80 22.42 0.20 -9.09 15 14 C -0.09 -3.15 9.98 22.35 0.22 -2.92 15 15 C -0.02 -0.79 6.71 22.54 0.15 -0.64 15 16 O -0.51 -15.71 13.50 -92.95 -1.25 -16.96 15 17 C -0.09 -3.48 9.98 22.35 0.22 -3.26 15 18 C -0.22 -9.82 9.26 22.42 0.21 -9.61 15 19 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 20 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.05 1.84 7.63 -2.38 -0.02 1.82 15 22 H 0.05 2.17 6.50 -2.39 -0.02 2.16 15 23 H 0.08 4.19 5.34 -2.39 -0.01 4.18 15 24 H 0.27 13.70 8.31 -92.71 -0.77 12.93 15 25 H 0.12 4.62 6.06 -2.91 -0.02 4.60 15 26 H 0.14 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.39 7.94 9.06 -74.06 -0.67 7.27 15 28 H 0.13 4.34 8.06 -2.91 -0.02 4.32 15 29 H 0.11 5.00 6.31 -2.91 -0.02 4.99 15 Total: -1.00 -59.60 246.96 3.72 -55.88 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.49 Total: 23.47 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.58 Total: -32.88 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.12 Total: -72.16 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -1.25 Total: -16.96 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.66 kcal Total: -59.60 3.72 -55.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307283737.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.368 kcal (2) G-P(sol) polarization free energy of solvation -59.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds