Wall clock time and date at job start Thu Apr 9 2020 14:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46861 * 254.38843 * 3 2 1 5 5 C 1.50701 * 109.46862 * 179.97438 * 4 3 2 6 6 O 1.21290 * 120.00084 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99984 * 179.97438 * 5 4 3 8 8 C 1.37097 * 120.00373 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99852 * 224.29560 * 8 7 5 10 10 C 1.38949 * 119.99918 * 44.28910 * 8 7 5 11 11 N 1.31413 * 119.99917 * 18.21196 * 10 8 7 12 12 Si 1.86800 * 120.00189 * 198.21142 * 10 8 7 13 13 H 1.48500 * 109.46908 * 90.00326 * 12 10 8 14 14 H 1.48498 * 109.47192 * 210.00185 * 12 10 8 15 15 H 1.48497 * 109.46872 * 330.00379 * 12 10 8 16 16 C 1.46504 * 119.99876 * 0.02562 * 7 5 4 17 17 C 1.52995 * 117.49718 * 183.22163 * 16 7 5 18 18 C 1.52994 * 117.50128 * 114.59933 * 16 7 5 19 19 H 4.44646 * 5.63361 * 179.97438 * 4 1 2 20 20 H 1.09000 * 109.47320 * 134.39108 * 3 2 1 21 21 H 1.08995 * 109.47327 * 14.38669 * 3 2 1 22 22 H 1.08995 * 109.47008 * 300.00022 * 4 3 2 23 23 H 1.09002 * 109.46895 * 60.00578 * 4 3 2 24 24 H 0.97001 * 120.00005 * 174.93555 * 11 10 8 25 25 H 1.09006 * 115.54901 * 328.91915 * 16 7 5 26 26 H 1.08999 * 117.50473 * 359.97438 * 17 16 7 27 27 H 1.09002 * 117.50133 * 145.01673 * 17 16 7 28 28 H 1.09004 * 117.49750 * 214.97913 * 18 16 7 29 29 H 1.08996 * 117.49782 * 359.96796 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.3891 1.3893 5 6 4.6628 0.3892 1.3895 6 8 5.2694 0.1068 0.3779 7 7 5.3365 0.7040 2.5135 8 6 6.7075 0.7046 2.5137 9 1 7.2476 0.2562 3.3344 10 6 7.4021 1.2819 1.4578 11 7 6.7940 2.1259 0.6546 12 14 9.2001 0.8585 1.1798 13 1 9.2981 -0.3159 0.2763 14 1 9.8918 2.0179 0.5613 15 1 9.8397 0.5370 2.4808 16 6 4.6038 1.0456 3.7353 17 6 5.4239 1.4668 4.9564 18 6 4.7402 0.0984 4.9291 19 1 -1.0501 0.0002 -0.0002 20 1 3.0090 0.7197 -0.7343 21 1 3.0098 -0.9946 -0.2553 22 1 2.7920 1.3843 1.6447 23 1 2.7928 -0.3300 2.1237 24 1 7.2962 2.5849 -0.0368 25 1 3.6391 1.5303 3.5850 26 1 6.5085 1.4894 4.8509 27 1 4.9988 2.2288 5.6096 28 1 3.8652 -0.0399 5.5643 29 1 5.3746 -0.7793 4.8052 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308214505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:18 Heat of formation + Delta-G solvation = 49.783732 kcal Electronic energy + Delta-G solvation = -13348.804868 eV Core-core repulsion = 11046.866500 eV Total energy + Delta-G solvation = -2301.938368 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -38.61014 -36.21049 -34.29928 -32.73570 -31.04839 -30.18560 -25.76207 -23.49971 -21.67579 -21.09169 -19.09632 -17.75781 -16.30798 -16.01897 -14.90746 -14.62298 -14.22891 -13.87069 -13.27889 -12.67698 -12.49233 -12.26178 -11.51791 -11.17432 -10.99630 -10.88030 -10.82076 -10.46034 -10.15468 -9.98333 -9.89694 -9.71533 -9.68477 -8.68161 -7.98635 -7.00382 -6.08988 -3.84588 3.09664 3.14508 3.32184 3.38981 3.42139 4.14733 4.29320 4.63873 4.79892 4.96166 5.31714 5.60261 5.68848 5.72913 5.78145 5.83960 6.04788 6.21481 6.24416 6.32460 6.51687 6.56600 6.60812 6.78258 6.95086 7.64208 7.90372 8.29899 9.09124 9.18371 9.69170 10.32125 11.00418 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.028900 B = 0.011366 C = 0.008664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.626303 B = 2462.957485 C = 3230.901348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.162 4.162 3 C 0.000 4.000 4 C -0.126 4.126 5 C 0.483 3.517 6 O -0.535 6.535 7 N -0.429 5.429 8 C -0.349 4.349 9 H 0.077 0.923 10 C 0.074 3.926 11 N -0.835 5.835 12 Si 0.913 3.087 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.075 3.925 17 C -0.174 4.174 18 C -0.208 4.208 19 H 0.213 0.787 20 H 0.094 0.906 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.264 0.736 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -1.612 4.256 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.162 4.162 3 C -0.037 4.037 4 C -0.167 4.167 5 C 0.271 3.729 6 O -0.413 6.413 7 N -0.150 5.150 8 C -0.476 4.476 9 H 0.094 0.906 10 C -0.137 4.137 11 N -0.468 5.468 12 Si 0.740 3.260 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.031 4.031 17 C -0.212 4.212 18 C -0.247 4.247 19 H 0.230 0.770 20 H 0.112 0.888 21 H 0.109 0.891 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.816 -1.675 3.499 7.842 hybrid contribution 0.569 0.025 -0.023 0.570 sum -6.247 -1.649 3.476 7.337 Atomic orbital electron populations 1.24731 0.95766 1.03104 1.02404 1.23583 0.94815 0.98780 0.99068 1.18504 0.82875 1.03941 0.98389 1.21537 0.96200 1.02295 0.96688 1.19744 0.87451 0.81023 0.84682 1.90525 1.69588 1.49579 1.31580 1.42776 1.05061 1.60502 1.06683 1.18853 0.79808 1.39983 1.08964 0.90557 1.25239 0.98770 0.93587 0.96068 1.69825 1.36614 1.22547 1.17853 0.86210 0.83106 0.78213 0.78464 1.20311 1.21321 1.19935 1.21704 0.96746 1.01005 0.83663 1.23056 1.01071 0.96648 1.00390 1.23309 1.02863 0.94879 1.03673 0.77016 0.88801 0.89122 0.90522 0.90522 0.92613 0.87990 0.87506 0.89839 0.89834 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.41 19.25 29.55 0.57 -2.84 15 2 C -0.16 -2.67 13.34 -37.12 -0.50 -3.17 15 3 C 0.00 0.00 4.99 -29.52 -0.15 -0.15 15 4 C -0.13 -2.47 4.28 -27.88 -0.12 -2.59 15 5 C 0.48 12.22 6.97 -10.98 -0.08 12.14 15 6 O -0.53 -15.58 13.74 5.55 0.08 -15.50 15 7 N -0.43 -10.79 2.83 -107.73 -0.31 -11.09 15 8 C -0.35 -9.57 7.92 -14.93 -0.12 -9.69 15 9 H 0.08 2.03 7.26 -52.49 -0.38 1.65 15 10 C 0.07 2.08 4.39 -17.47 -0.08 2.01 15 11 N -0.84 -24.82 11.74 55.50 0.65 -24.17 15 12 Si 0.91 22.01 29.59 -169.99 -5.03 16.98 15 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.27 -6.31 7.11 56.52 0.40 -5.90 15 16 C 0.08 1.51 5.87 -67.93 -0.40 1.11 15 17 C -0.17 -3.16 9.80 -26.74 -0.26 -3.42 15 18 C -0.21 -3.58 10.36 -26.74 -0.28 -3.86 15 19 H 0.21 2.08 7.80 -54.09 -0.42 1.66 15 20 H 0.09 1.83 8.10 -51.93 -0.42 1.41 15 21 H 0.09 1.67 8.10 -51.93 -0.42 1.25 15 22 H 0.08 1.42 7.56 -51.93 -0.39 1.03 15 23 H 0.08 1.34 8.11 -51.93 -0.42 0.92 15 24 H 0.26 7.51 8.32 -40.82 -0.34 7.17 15 25 H 0.10 1.85 6.96 -51.93 -0.36 1.48 15 26 H 0.11 2.15 6.72 -51.93 -0.35 1.80 15 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 29 H 0.09 1.67 8.14 -51.93 -0.42 1.24 15 LS Contribution 259.74 15.07 3.91 3.91 Total: -1.00 -32.17 259.74 -5.67 -37.84 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.57 Total: 2.48 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.40 Total: -10.45 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.35 Total: -35.26 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.08 Total: -15.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.17 -5.67 -37.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308214505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.622 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds