Wall clock time and date at job start Thu Apr 9 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46861 * 254.38843 * 3 2 1 5 5 C 1.50701 * 109.46862 * 179.97438 * 4 3 2 6 6 O 1.21290 * 120.00084 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99984 * 179.97438 * 5 4 3 8 8 C 1.37097 * 120.00373 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99852 * 224.29560 * 8 7 5 10 10 C 1.38949 * 119.99918 * 44.28910 * 8 7 5 11 11 N 1.31413 * 119.99917 * 18.21196 * 10 8 7 12 12 Si 1.86800 * 120.00189 * 198.21142 * 10 8 7 13 13 H 1.48500 * 109.46908 * 90.00326 * 12 10 8 14 14 H 1.48498 * 109.47192 * 210.00185 * 12 10 8 15 15 H 1.48497 * 109.46872 * 330.00379 * 12 10 8 16 16 C 1.46504 * 119.99876 * 0.02562 * 7 5 4 17 17 C 1.52995 * 117.49718 * 183.22163 * 16 7 5 18 18 C 1.52994 * 117.50128 * 114.59933 * 16 7 5 19 19 H 4.44646 * 5.63361 * 179.97438 * 4 1 2 20 20 H 1.09000 * 109.47320 * 134.39108 * 3 2 1 21 21 H 1.08995 * 109.47327 * 14.38669 * 3 2 1 22 22 H 1.08995 * 109.47008 * 300.00022 * 4 3 2 23 23 H 1.09002 * 109.46895 * 60.00578 * 4 3 2 24 24 H 0.97001 * 120.00005 * 174.93555 * 11 10 8 25 25 H 1.09006 * 115.54901 * 328.91915 * 16 7 5 26 26 H 1.08999 * 117.50473 * 359.97438 * 17 16 7 27 27 H 1.09002 * 117.50133 * 145.01673 * 17 16 7 28 28 H 1.09004 * 117.49750 * 214.97913 * 18 16 7 29 29 H 1.08996 * 117.49782 * 359.96796 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.3891 1.3893 5 6 4.6628 0.3892 1.3895 6 8 5.2694 0.1068 0.3779 7 7 5.3365 0.7040 2.5135 8 6 6.7075 0.7046 2.5137 9 1 7.2476 0.2562 3.3344 10 6 7.4021 1.2819 1.4578 11 7 6.7940 2.1259 0.6546 12 14 9.2001 0.8585 1.1798 13 1 9.2981 -0.3159 0.2763 14 1 9.8918 2.0179 0.5613 15 1 9.8397 0.5370 2.4808 16 6 4.6038 1.0456 3.7353 17 6 5.4239 1.4668 4.9564 18 6 4.7402 0.0984 4.9291 19 1 -1.0501 0.0002 -0.0002 20 1 3.0090 0.7197 -0.7343 21 1 3.0098 -0.9946 -0.2553 22 1 2.7920 1.3843 1.6447 23 1 2.7928 -0.3300 2.1237 24 1 7.2962 2.5849 -0.0368 25 1 3.6391 1.5303 3.5850 26 1 6.5085 1.4894 4.8509 27 1 4.9988 2.2288 5.6096 28 1 3.8652 -0.0399 5.5643 29 1 5.3746 -0.7793 4.8052 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308214505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:17 Heat of formation + Delta-G solvation = 29.920141 kcal Electronic energy + Delta-G solvation = -13349.666218 eV Core-core repulsion = 11046.866500 eV Total energy + Delta-G solvation = -2302.799717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43729 -37.87898 -35.76237 -34.66176 -32.90475 -31.69841 -27.62477 -25.22461 -23.10332 -22.74143 -20.96382 -19.02714 -18.11525 -17.76512 -16.75659 -16.36719 -15.94213 -15.49197 -14.88090 -14.40831 -14.04574 -13.89519 -13.32509 -12.92899 -12.85004 -12.69654 -12.35211 -12.18464 -12.03216 -11.64515 -11.27424 -11.12048 -10.98423 -10.71596 -9.94412 -8.96357 -8.19512 -5.98000 1.36079 1.44688 1.49339 1.89784 1.96118 2.25865 2.42108 3.08519 3.14066 3.37118 3.58911 4.12658 4.14113 4.23450 4.29165 4.34918 4.52619 4.69297 4.90889 5.03521 5.08948 5.11977 5.20461 5.31312 5.47509 5.51208 6.21550 6.73768 7.04742 7.20949 7.71423 8.37006 8.89562 Molecular weight = 207.10amu Principal moments of inertia in cm(-1) A = 0.028900 B = 0.011366 C = 0.008664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.626303 B = 2462.957485 C = 3230.901348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.222 4.222 3 C 0.010 3.990 4 C -0.109 4.109 5 C 0.466 3.534 6 O -0.588 6.588 7 N -0.445 5.445 8 C -0.357 4.357 9 H 0.077 0.923 10 C 0.021 3.979 11 N -0.874 5.874 12 Si 0.970 3.030 13 H -0.291 1.291 14 H -0.281 1.281 15 H -0.254 1.254 16 C 0.042 3.958 17 C -0.171 4.171 18 C -0.179 4.179 19 H 0.257 0.743 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.101 0.899 24 H 0.259 0.741 25 H 0.126 0.874 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 -1.851 6.006 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.222 4.222 3 C -0.027 4.027 4 C -0.149 4.149 5 C 0.255 3.745 6 O -0.470 6.470 7 N -0.166 5.166 8 C -0.485 4.485 9 H 0.095 0.905 10 C -0.185 4.185 11 N -0.509 5.509 12 Si 0.795 3.205 13 H -0.217 1.217 14 H -0.206 1.206 15 H -0.178 1.178 16 C -0.063 4.063 17 C -0.208 4.208 18 C -0.218 4.218 19 H 0.273 0.727 20 H 0.087 0.913 21 H 0.097 0.903 22 H 0.106 0.894 23 H 0.119 0.881 24 H 0.069 0.931 25 H 0.143 0.857 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.762 -1.909 5.310 10.422 hybrid contribution 1.061 0.059 -0.493 1.171 sum -7.701 -1.851 4.817 9.270 Atomic orbital electron populations 1.25691 0.96426 0.99635 0.98889 1.23317 0.94690 1.01905 1.02249 1.18162 0.84926 1.02531 0.97095 1.21397 0.91793 1.03620 0.98118 1.20742 0.89853 0.79878 0.84023 1.90478 1.71259 1.51788 1.33457 1.43031 1.04820 1.60277 1.08456 1.19111 0.81521 1.39101 1.08718 0.90504 1.26064 1.02777 0.93606 0.96030 1.69936 1.38023 1.24181 1.18777 0.85314 0.78936 0.77414 0.78805 1.21748 1.20629 1.17769 1.22039 0.97721 1.04047 0.82479 1.23109 0.99611 0.98531 0.99597 1.23322 1.03525 0.93499 1.01456 0.72675 0.91333 0.90298 0.89388 0.88052 0.93148 0.85688 0.90132 0.86456 0.85679 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.60 19.25 74.32 1.43 -3.17 15 2 C -0.22 -6.95 13.34 31.12 0.42 -6.53 15 3 C 0.01 0.38 4.99 28.79 0.14 0.52 15 4 C -0.11 -4.21 4.28 29.85 0.13 -4.08 15 5 C 0.47 24.05 6.97 87.66 0.61 24.66 15 6 O -0.59 -35.80 13.74 -3.06 -0.04 -35.85 15 7 N -0.45 -22.55 2.83 -613.14 -1.74 -24.29 15 8 C -0.36 -19.91 7.92 84.04 0.67 -19.24 15 9 H 0.08 4.15 7.26 -2.91 -0.02 4.13 15 10 C 0.02 1.22 4.39 84.93 0.37 1.60 15 11 N -0.87 -53.82 11.74 21.66 0.25 -53.57 15 12 Si 0.97 46.25 29.59 68.60 2.03 48.28 15 13 H -0.29 -14.38 7.11 99.48 0.71 -13.67 15 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 15 H -0.25 -11.10 7.11 99.48 0.71 -10.40 15 16 C 0.04 1.62 5.87 44.99 0.26 1.89 15 17 C -0.17 -5.83 9.80 30.59 0.30 -5.53 15 18 C -0.18 -5.63 10.36 30.59 0.32 -5.31 15 19 H 0.26 3.51 7.80 -4.42 -0.03 3.48 15 20 H 0.07 2.84 8.10 -2.39 -0.02 2.82 15 21 H 0.08 3.04 8.10 -2.39 -0.02 3.02 15 22 H 0.09 3.17 7.56 -2.39 -0.02 3.16 15 23 H 0.10 3.37 8.11 -2.39 -0.02 3.35 15 24 H 0.26 15.38 8.32 -92.71 -0.77 14.61 15 25 H 0.13 4.19 6.96 -2.38 -0.02 4.17 15 26 H 0.08 3.19 6.72 -2.39 -0.02 3.17 15 27 H 0.12 3.18 8.14 -2.39 -0.02 3.16 15 28 H 0.13 2.93 8.14 -2.38 -0.02 2.91 15 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 Total: -1.00 -72.65 259.74 6.28 -66.37 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.13 Total: 14.26 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.65 Total: -15.20 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -1.48 Total: -77.86 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.04 Total: -35.85 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -72.65 6.28 -66.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308214505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.291 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds