Wall clock time and date at job start Thu Apr 9 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.30813 * 121.81641 * 2 1 4 4 S 1.75735 * 109.94160 * 180.02562 * 3 2 1 5 5 C 1.76387 * 90.74541 * 359.97438 * 4 3 2 6 6 N 1.32279 * 141.22476 * 180.41089 * 5 4 3 7 7 C 1.35564 * 109.04408 * 180.02562 * 6 5 4 8 8 C 1.41156 * 126.31984 * 179.82386 * 7 6 5 9 9 H 1.08002 * 120.00181 * 185.92042 * 8 7 6 10 10 C 1.39683 * 120.00097 * 5.92326 * 8 7 6 11 11 N 1.31028 * 119.99997 * 183.40625 * 10 8 7 12 12 Si 1.86801 * 119.99713 * 3.40728 * 10 8 7 13 13 H 1.48501 * 109.46786 * 180.02562 * 12 10 8 14 14 H 1.48495 * 109.47319 * 300.00029 * 12 10 8 15 15 H 1.48497 * 109.46907 * 60.00132 * 12 10 8 16 16 C 1.38888 * 107.36026 * 359.56398 * 7 6 5 17 17 N 1.35652 * 109.11937 * 0.02562 * 5 4 3 18 18 H 1.09005 * 109.46769 * 269.98148 * 1 2 3 19 19 H 1.08991 * 109.47086 * 29.97570 * 1 2 3 20 20 H 1.08996 * 109.46586 * 149.98151 * 1 2 3 21 21 H 1.08001 * 125.03023 * 359.97438 * 3 2 1 22 22 H 0.97000 * 120.00246 * 354.79186 * 11 10 8 23 23 H 1.08005 * 126.64831 * 180.26145 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1116 0.0000 4 16 3.9164 0.7500 -0.0007 5 6 3.5759 -0.9807 -0.0002 6 7 4.1897 -2.1525 0.0057 7 6 3.2598 -3.1389 0.0005 8 6 3.5139 -4.5274 0.0007 9 1 2.6965 -5.2261 -0.1001 10 6 4.8226 -4.9980 0.1314 11 7 5.0663 -6.2837 0.0647 12 14 6.2253 -3.7942 0.4013 13 1 7.5047 -4.5406 0.5067 14 1 6.2957 -2.8513 -0.7437 15 1 5.9905 -3.0338 1.6551 16 6 2.0109 -2.5312 0.0011 17 7 2.2326 -1.1693 -0.0001 18 1 -0.3633 -0.0003 1.0277 19 1 -0.3633 0.8901 -0.5134 20 1 -0.3632 -0.8898 -0.5141 21 1 1.7720 2.1046 -0.0004 22 1 4.3317 -6.9139 0.0004 23 1 1.0521 -3.0283 0.0018 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075395732.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:11 Heat of formation + Delta-G solvation = 51.967749 kcal Electronic energy + Delta-G solvation = -11179.528557 eV Core-core repulsion = 9119.178761 eV Total energy + Delta-G solvation = -2060.349796 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.98113 -37.91899 -35.36323 -32.09953 -31.05481 -29.20255 -26.66812 -23.85337 -21.91084 -20.83826 -19.66362 -18.99660 -16.84546 -16.40215 -15.89736 -15.65971 -14.94099 -14.51667 -14.26560 -14.04227 -13.51583 -13.35685 -13.04184 -12.45488 -12.05988 -11.97612 -11.61934 -11.33053 -11.13543 -10.26700 -9.70556 -9.26072 -8.47464 -6.59746 0.04584 0.16555 0.88655 1.43289 1.48481 1.52703 1.92780 2.03543 2.11867 2.42262 3.25604 3.69300 3.94359 4.26961 4.57901 4.65508 4.75257 4.81710 4.97233 5.16998 5.45556 5.55535 5.93130 6.28139 6.49982 6.76166 7.14404 8.11777 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.048954 B = 0.012057 C = 0.009748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.829684 B = 2321.652599 C = 2871.622800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.061 3.939 3 C -0.231 4.231 4 S 0.171 5.829 5 C 0.112 3.888 6 N -0.545 5.545 7 C 0.178 3.822 8 C -0.522 4.522 9 H 0.064 0.936 10 C 0.017 3.983 11 N -0.860 5.860 12 Si 1.157 2.843 13 H -0.307 1.307 14 H -0.276 1.276 15 H -0.292 1.292 16 C -0.207 4.207 17 N -0.395 5.395 18 H 0.091 0.909 19 H 0.122 0.878 20 H 0.061 0.939 21 H 0.239 0.761 22 H 0.275 0.725 23 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 16.750 0.195 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C -0.369 4.369 4 S 0.419 5.581 5 C -0.252 4.252 6 N -0.278 5.278 7 C 0.054 3.946 8 C -0.557 4.557 9 H 0.083 0.917 10 C -0.196 4.196 11 N -0.487 5.487 12 Si 0.986 3.014 13 H -0.237 1.237 14 H -0.203 1.203 15 H -0.219 1.219 16 C -0.335 4.335 17 N -0.076 5.076 18 H 0.110 0.890 19 H 0.141 0.859 20 H 0.080 0.920 21 H 0.255 0.745 22 H 0.086 0.914 23 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.283 17.371 0.328 17.895 hybrid contribution -3.783 -1.775 -0.202 4.184 sum -8.066 15.596 0.126 17.559 Atomic orbital electron populations 1.20733 0.84180 1.05138 1.04546 1.19810 0.97893 0.82800 1.04407 1.25074 0.94263 1.02888 1.14631 1.84045 1.05780 0.85617 1.82688 1.26780 0.84561 1.01913 1.11926 1.70005 1.31908 0.96491 1.29424 1.18806 0.87905 0.92706 0.95167 1.19645 0.96069 0.89470 1.50481 0.91738 1.27969 1.03001 0.99323 0.89258 1.70757 1.36788 1.02884 1.38267 0.82080 0.70110 0.70542 0.78664 1.23676 1.20302 1.21943 1.22620 0.99598 0.78840 1.32406 1.43367 1.06411 1.06158 1.51686 0.89032 0.85941 0.92046 0.74503 0.91441 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 10.18 71.24 0.73 -0.95 14 2 C 0.06 1.79 6.75 41.80 0.28 2.07 14 3 C -0.23 -5.37 10.78 67.97 0.73 -4.64 14 4 S 0.17 5.34 23.37 -56.49 -1.32 4.02 14 5 C 0.11 5.16 8.89 179.54 1.60 6.75 14 6 N -0.55 -30.09 6.57 -188.48 -1.24 -31.32 14 7 C 0.18 10.13 6.40 39.44 0.25 10.38 14 8 C -0.52 -31.70 9.81 23.34 0.23 -31.47 14 9 H 0.06 3.95 8.05 -2.91 -0.02 3.93 14 10 C 0.02 1.01 5.51 85.16 0.47 1.48 14 11 N -0.86 -52.08 13.67 21.79 0.30 -51.78 14 12 Si 1.16 61.78 25.82 68.60 1.77 63.55 14 13 H -0.31 -15.54 7.11 99.48 0.71 -14.83 14 14 H -0.28 -14.81 6.76 99.48 0.67 -14.14 14 15 H -0.29 -15.62 7.11 99.48 0.71 -14.92 14 16 C -0.21 -10.05 12.01 83.88 1.01 -9.04 14 17 N -0.39 -16.63 3.14 -338.81 -1.06 -17.70 14 18 H 0.09 1.54 8.14 -2.38 -0.02 1.52 14 19 H 0.12 1.37 8.10 -2.39 -0.02 1.35 14 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 14 21 H 0.24 2.77 8.06 -2.91 -0.02 2.74 14 22 H 0.28 16.17 8.73 -92.71 -0.81 15.36 14 23 H 0.17 7.52 8.06 -2.91 -0.02 7.50 14 Total: -1.00 -73.68 221.15 4.89 -68.79 By element: Atomic # 1 Polarization: -11.30 SS G_CDS: 1.15 Total: -10.15 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 5.29 Total: -25.41 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -2.00 Total: -100.81 kcal Atomic # 14 Polarization: 61.78 SS G_CDS: 1.77 Total: 63.55 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -1.32 Total: 4.02 kcal Total: -73.68 4.89 -68.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395732.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.762 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds