Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47183 * 239.99845 * 3 2 1 5 5 H 1.48504 * 109.47670 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00110 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 N 1.31803 * 119.11913 * 269.72300 * 13 12 11 15 15 C 1.32333 * 120.81208 * 179.75979 * 14 13 12 16 16 C 1.38592 * 119.11047 * 0.50927 * 15 14 13 17 17 C 1.38593 * 118.39674 * 359.74948 * 16 15 14 18 18 N 1.31797 * 119.12612 * 89.99824 * 13 12 11 19 19 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 21 21 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 23 23 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 24 24 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 25 25 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 26 26 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 27 27 H 1.08006 * 120.44382 * 180.23897 * 15 14 13 28 28 H 1.07997 * 120.80402 * 179.77456 * 16 15 14 29 29 H 1.08007 * 120.44813 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 1.6472 -7.3604 -0.0043 14 7 1.3161 -7.9109 1.1466 15 6 0.6205 -9.0360 1.1846 16 6 0.2497 -9.6400 -0.0064 17 6 0.6207 -9.0340 -1.1963 18 7 1.3120 -7.9063 -1.1562 19 1 -0.4850 0.8401 -0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8726 -3.6048 0.8877 23 1 2.8713 -3.6039 -0.8922 24 1 0.8740 -4.9838 -0.7836 25 1 3.0631 -6.0345 -0.8931 26 1 3.0632 -6.0353 0.8869 27 1 0.3492 -9.4800 2.1311 28 1 -0.3151 -10.5605 -0.0073 29 1 0.3489 -9.4758 -2.1436 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702326126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = 41.436343 kcal Electronic energy + Delta-G solvation = -12455.309956 eV Core-core repulsion = 10185.302370 eV Total energy + Delta-G solvation = -2270.007586 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.00904 -36.08007 -33.72964 -33.25516 -32.05478 -29.44130 -26.25760 -24.58762 -23.72427 -22.07411 -20.55598 -17.57731 -17.05039 -16.29632 -15.51802 -15.17298 -14.81589 -14.42371 -13.71033 -13.59690 -13.45991 -12.43516 -12.08438 -12.03178 -11.04487 -10.92737 -10.87953 -10.83165 -10.53838 -9.98332 -9.73062 -9.34646 -9.25253 -9.12551 -8.32211 -7.85539 -5.96613 -3.99341 0.81406 1.04852 3.36177 3.40201 3.42653 3.66457 3.92421 4.12660 4.47545 4.49579 4.88027 4.99234 5.00521 5.29691 5.39216 5.49969 5.79084 5.86080 6.32011 6.34220 6.41004 6.95672 6.98675 7.42217 7.73618 7.80934 7.94041 8.09814 8.11338 8.45584 9.07626 9.64146 11.14880 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.082789 B = 0.004966 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.126104 B = 5636.679324 C = 5680.222852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.068 3.932 11 N -0.682 5.682 12 C 0.124 3.876 13 C 0.332 3.668 14 N -0.501 5.501 15 C 0.147 3.853 16 C -0.239 4.239 17 C 0.146 3.854 18 N -0.517 5.517 19 H 0.261 0.739 20 H 0.014 0.986 21 H 0.026 0.974 22 H 0.062 0.938 23 H 0.020 0.980 24 H 0.339 0.661 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.145 0.855 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -18.533 -0.784 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.060 4.060 11 N -0.314 5.314 12 C -0.007 4.007 13 C 0.065 3.935 14 N -0.214 5.214 15 C -0.020 4.020 16 C -0.261 4.261 17 C -0.020 4.020 18 N -0.232 5.232 19 H 0.071 0.929 20 H 0.032 0.968 21 H 0.044 0.956 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.156 0.844 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.184 0.816 28 H 0.163 0.837 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.662 -17.558 -0.093 17.637 hybrid contribution 0.094 -0.003 -0.929 0.934 sum 1.756 -17.561 -1.023 17.678 Atomic orbital electron populations 1.69973 1.06051 1.26692 1.50570 1.25009 0.94854 0.99236 0.95304 0.86627 0.79532 0.83043 0.78592 1.20282 1.21299 1.20204 1.21134 0.92987 0.90941 1.50996 0.92696 1.19065 0.94028 0.90296 0.97811 1.22206 0.97090 0.87696 0.99031 1.60602 1.19372 1.01468 1.49988 1.20658 0.93026 0.84748 1.02299 1.23308 0.91705 0.95351 0.83170 1.68327 1.12304 1.10168 1.30638 1.23294 0.90062 0.89895 0.98725 1.22882 1.04479 1.03575 0.95154 1.23222 0.90125 0.89910 0.98748 1.68304 1.13032 1.11063 1.30784 0.92944 0.96773 0.95570 0.91910 0.96214 0.84353 0.92913 0.88698 0.81609 0.83715 0.81670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 15 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.03 0.68 5.23 -27.89 -0.15 0.54 15 10 C 0.07 1.47 5.62 -3.82 -0.02 1.44 15 11 N -0.68 -13.20 6.49 -115.06 -0.75 -13.94 15 12 C 0.12 2.01 6.12 -4.98 -0.03 1.98 15 13 C 0.33 5.18 7.15 -157.19 -1.12 4.06 15 14 N -0.50 -7.47 10.34 -10.72 -0.11 -7.58 15 15 C 0.15 1.60 11.30 -17.21 -0.19 1.40 15 16 C -0.24 -2.15 10.17 -39.32 -0.40 -2.55 15 17 C 0.15 1.55 11.30 -17.20 -0.19 1.36 15 18 N -0.52 -7.44 10.34 -10.72 -0.11 -7.55 15 19 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 20 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 15 21 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 24 H 0.34 6.55 8.72 -39.29 -0.34 6.21 15 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.09 1.50 8.14 -51.93 -0.42 1.07 15 27 H 0.17 1.22 8.06 -52.48 -0.42 0.80 15 28 H 0.15 0.76 8.06 -52.49 -0.42 0.34 15 29 H 0.17 1.16 8.06 -52.48 -0.42 0.74 15 LS Contribution 260.59 15.07 3.93 3.93 Total: -1.00 -32.91 260.59 -7.54 -40.45 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.69 Total: 0.00 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.52 Total: -5.57 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.23 Total: -55.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.91 -7.54 -40.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702326126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.882 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds