Wall clock time and date at job start Thu Apr 9 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32162 * 119.99902 * 2 1 4 4 C 1.32113 * 119.99904 * 180.27223 * 3 2 1 5 5 C 1.38394 * 120.00027 * 359.73563 * 4 3 2 6 6 N 1.32123 * 119.99410 * 359.97438 * 5 4 3 7 7 C 1.32153 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99754 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46577 * 89.99970 * 8 7 6 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47194 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00034 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00022 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99865 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00095 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47027 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46675 * 120.00507 * 15 13 11 18 18 H 1.48501 * 109.47312 * 240.00337 * 15 13 11 19 19 H 1.08992 * 109.47411 * 270.24775 * 1 2 3 20 20 H 1.09006 * 109.46935 * 30.24756 * 1 2 3 21 21 H 1.09000 * 109.47132 * 150.24306 * 1 2 3 22 22 H 1.08001 * 120.00474 * 179.71616 * 4 3 2 23 23 H 1.08003 * 120.00226 * 179.97438 * 5 4 3 24 24 H 1.09000 * 109.47318 * 209.99478 * 8 7 6 25 25 H 1.09000 * 109.47161 * 330.00108 * 8 7 6 26 26 H 1.00898 * 110.99915 * 56.05080 * 9 8 7 27 27 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 28 28 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 29 29 H 0.97003 * 120.00178 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4889 1.1446 -0.0054 5 6 4.1809 -0.0539 -0.0056 6 7 3.5202 -1.1981 0.0002 7 6 2.1987 -1.1980 0.0056 8 6 1.4451 -2.5031 0.0117 9 7 1.2061 -2.9240 1.3986 10 6 0.4714 -4.1953 1.4438 11 6 0.2447 -4.5938 2.8793 12 1 0.6094 -3.9652 3.6783 13 6 -0.4293 -5.7602 3.1728 14 7 -0.8740 -6.5253 2.1999 15 14 -0.7098 -6.2545 4.9523 16 1 -0.1156 -5.2313 5.8497 17 1 -2.1681 -6.3552 5.2140 18 1 -0.0690 -7.5696 5.2076 19 1 -0.3634 0.0044 1.0276 20 1 -0.3633 0.8878 -0.5177 21 1 -0.3633 -0.8922 -0.5101 22 1 4.0290 2.0798 -0.0101 23 1 5.2609 -0.0540 -0.0105 24 1 0.4906 -2.3739 -0.4985 25 1 2.0321 -3.2639 -0.5029 26 1 0.7193 -2.2069 1.9153 27 1 -0.4899 -4.0774 0.9437 28 1 1.0512 -4.9681 0.9391 29 1 -1.3478 -7.3462 2.4063 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704069624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:42 Heat of formation + Delta-G solvation = 17.760623 kcal Electronic energy + Delta-G solvation = -12835.924190 eV Core-core repulsion = 10564.889947 eV Total energy + Delta-G solvation = -2271.034243 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.13144 -37.45219 -35.48323 -34.95935 -33.40203 -29.71863 -28.82420 -26.77087 -24.09754 -23.72108 -22.98551 -18.88036 -18.67508 -17.36075 -16.82151 -16.47479 -16.26840 -15.81457 -14.94124 -14.86762 -14.16143 -13.87441 -13.61165 -13.56886 -13.10660 -12.90398 -12.66030 -12.54116 -12.43074 -12.12643 -11.95059 -11.33873 -10.67069 -10.04186 -9.98621 -9.17219 -8.22961 -6.33796 -0.19728 0.17313 1.41427 1.42477 1.56062 2.39751 2.67698 3.09144 3.10723 3.21417 3.50295 3.67138 3.86286 4.14444 4.35302 4.40728 4.48985 4.60889 4.74167 4.83285 5.06449 5.07613 5.24699 5.48262 5.59285 5.98927 6.34216 6.39401 6.63195 6.84628 6.87883 7.36753 8.88668 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.054457 B = 0.006366 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.044381 B = 4397.282411 C = 4471.852605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.075 3.925 3 N -0.457 5.457 4 C 0.054 3.946 5 C 0.040 3.960 6 N -0.455 5.455 7 C 0.075 3.925 8 C 0.110 3.890 9 N -0.681 5.681 10 C 0.210 3.790 11 C -0.536 4.536 12 H 0.061 0.939 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.973 3.027 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.279 1.279 19 H 0.086 0.914 20 H 0.093 0.907 21 H 0.083 0.917 22 H 0.211 0.789 23 H 0.203 0.797 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.334 0.666 27 H -0.026 1.026 28 H 0.002 0.998 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 14.571 -4.654 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 N -0.173 5.173 4 C -0.107 4.107 5 C -0.120 4.120 6 N -0.170 5.170 7 C -0.065 4.065 8 C -0.020 4.020 9 N -0.312 5.312 10 C 0.082 3.918 11 C -0.574 4.574 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.797 3.203 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.205 1.205 19 H 0.105 0.895 20 H 0.112 0.888 21 H 0.101 0.899 22 H 0.228 0.772 23 H 0.220 0.780 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.151 0.849 27 H -0.008 1.008 28 H 0.020 0.980 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.071 14.081 -4.631 16.018 hybrid contribution -0.922 -0.403 0.381 1.076 sum 5.149 13.678 -4.250 15.221 Atomic orbital electron populations 1.20835 0.86676 1.04569 1.04174 1.22302 0.99328 0.88753 0.96070 1.68353 1.10264 1.28670 1.10017 1.24440 0.90225 1.01287 0.94728 1.24432 1.03501 0.88078 0.96018 1.68240 1.08703 1.31783 1.08254 1.21911 0.90918 0.96028 0.97617 1.20735 0.97619 0.91909 0.91754 1.60529 1.53719 1.06007 1.10957 1.19245 0.89845 0.86444 0.96240 1.21515 1.35611 1.07336 0.92929 0.92079 1.25906 0.95074 0.96160 1.02321 1.70084 1.38974 1.14260 1.33811 0.85290 0.77954 0.78118 0.78945 1.18931 1.20043 1.20468 0.89538 0.88793 0.89879 0.77250 0.77991 0.92143 0.91214 0.84861 1.00810 0.98008 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 9.79 71.24 0.70 -1.84 15 2 C 0.07 2.17 6.78 42.53 0.29 2.46 15 3 N -0.46 -12.15 10.42 -183.30 -1.91 -14.06 15 4 C 0.05 1.12 11.23 84.69 0.95 2.07 15 5 C 0.04 0.93 11.23 84.69 0.95 1.88 15 6 N -0.45 -14.79 10.42 -183.29 -1.91 -16.70 15 7 C 0.07 2.49 6.30 42.54 0.27 2.76 15 8 C 0.11 4.08 5.59 85.56 0.48 4.56 15 9 N -0.68 -30.20 6.48 -521.96 -3.38 -33.59 15 10 C 0.21 11.24 5.44 85.56 0.47 11.71 15 11 C -0.54 -30.74 9.32 25.60 0.24 -30.50 15 12 H 0.06 3.45 7.81 -2.91 -0.02 3.42 15 13 C 0.00 0.22 5.46 84.65 0.46 0.68 15 14 N -0.93 -55.91 13.29 21.45 0.28 -55.62 15 15 Si 0.97 44.38 29.54 68.60 2.03 46.40 15 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 19 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.09 1.93 8.14 -2.38 -0.02 1.91 15 21 H 0.08 1.99 5.95 -2.39 -0.01 1.98 15 22 H 0.21 2.27 8.06 -2.91 -0.02 2.25 15 23 H 0.20 2.90 8.06 -2.91 -0.02 2.88 15 24 H 0.06 2.04 5.94 -2.39 -0.01 2.03 15 25 H 0.07 2.76 8.14 -2.39 -0.02 2.75 15 26 H 0.33 13.99 8.71 -89.70 -0.78 13.21 15 27 H -0.03 -1.43 8.14 -2.39 -0.02 -1.45 15 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 15 29 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 Total: -1.00 -68.95 256.14 0.28 -68.67 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.37 Total: 11.12 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 4.80 Total: -6.23 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.92 Total: -119.97 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.95 0.28 -68.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704069624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.429 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds