Wall clock time and date at job start Thu Apr 9 2020 14:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38600 * 121.04367 * 2 1 4 4 C 1.38774 * 118.03688 * 180.31486 * 3 2 1 5 5 N 1.31821 * 120.01979 * 359.68334 * 4 3 2 6 6 N 1.28350 * 122.27803 * 0.02562 * 5 4 3 7 7 C 1.32521 * 122.06990 * 359.97438 * 6 5 4 8 8 N 1.39049 * 120.15744 * 180.02562 * 7 6 5 9 9 C 1.46898 * 110.99943 * 298.93783 * 8 7 6 10 10 C 1.46899 * 111.00087 * 62.90180 * 8 7 6 11 11 C 1.50702 * 109.47181 * 169.99881 * 10 8 7 12 12 H 1.07994 * 119.99868 * 359.97438 * 11 10 8 13 13 C 1.37873 * 119.99760 * 179.97438 * 11 10 8 14 14 N 1.31510 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99852 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47081 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47005 * 120.00386 * 15 13 11 18 18 H 1.48500 * 109.47101 * 240.00762 * 15 13 11 19 19 H 1.09005 * 109.46936 * 272.30508 * 1 2 3 20 20 H 1.09003 * 109.47439 * 32.30274 * 1 2 3 21 21 H 1.09001 * 109.47455 * 152.30384 * 1 2 3 22 22 H 1.07999 * 120.98635 * 0.02562 * 3 2 1 23 23 H 1.08001 * 119.98968 * 179.70886 * 4 3 2 24 24 H 1.09000 * 109.46844 * 189.22659 * 9 8 7 25 25 H 1.08988 * 109.47512 * 309.23696 * 9 8 7 26 26 H 1.09000 * 109.46437 * 69.23912 * 9 8 7 27 27 H 1.08999 * 109.47351 * 49.99324 * 10 8 7 28 28 H 1.09005 * 109.46607 * 289.99921 * 10 8 7 29 29 H 0.97002 * 120.00241 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2218 1.1875 0.0000 4 6 3.6076 1.1147 -0.0067 5 7 4.2063 -0.0597 -0.0066 6 7 3.5509 -1.1632 -0.0008 7 6 2.2261 -1.1947 0.0059 8 7 1.5563 -2.4132 0.0125 9 6 1.8783 -3.1974 -1.1872 10 6 1.8562 -3.1722 1.2339 11 6 0.9353 -4.3616 1.3252 12 1 0.2004 -4.5359 0.5533 13 6 1.0309 -5.2270 2.3942 14 7 1.9255 -5.0144 3.3344 15 14 -0.1111 -6.7009 2.5077 16 1 -1.0197 -6.7147 1.3332 17 1 0.6925 -7.9495 2.5261 18 1 -0.9138 -6.6104 3.7538 19 1 -0.3633 0.0413 1.0269 20 1 -0.3634 0.8686 -0.5492 21 1 -0.3634 -0.9099 -0.4776 22 1 1.7152 2.1413 0.0004 23 1 4.1957 2.0205 -0.0117 24 1 1.2224 -4.0664 -1.2400 25 1 1.7357 -2.5801 -2.0740 26 1 2.9158 -3.5279 -1.1375 27 1 1.7108 -2.5323 2.1043 28 1 2.8905 -3.5150 1.2038 29 1 1.9926 -5.6231 4.0867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953028617.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:47 Heat of formation + Delta-G solvation = 63.165344 kcal Electronic energy + Delta-G solvation = -13312.153162 eV Core-core repulsion = 11043.087816 eV Total energy + Delta-G solvation = -2269.065346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72499 -36.71161 -33.96359 -32.70665 -30.99883 -27.85581 -27.28031 -25.59260 -23.38525 -22.40362 -20.93667 -17.33255 -16.66206 -15.97345 -15.48425 -15.03556 -14.38140 -13.67716 -13.26851 -13.13913 -12.81150 -12.64262 -12.07268 -12.03376 -11.46589 -11.05132 -10.93023 -10.62785 -10.49638 -10.08863 -9.71744 -9.58958 -9.24364 -8.99234 -8.50013 -7.62005 -6.06825 -4.09978 1.15072 1.29323 3.29234 3.36439 3.40580 3.90211 4.24441 4.46572 4.65946 4.85078 4.92692 5.19395 5.28751 5.46400 5.63239 5.89374 5.94546 6.10434 6.15672 6.31436 6.46678 6.59623 6.64154 7.15600 7.30495 7.71419 7.85345 8.04223 8.41396 8.96067 9.14983 9.54096 11.04168 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.048096 B = 0.008507 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.025146 B = 3290.428955 C = 3439.949219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.063 4.063 3 C -0.131 4.131 4 C 0.021 3.979 5 N -0.247 5.247 6 N -0.270 5.270 7 C 0.260 3.740 8 N -0.488 5.488 9 C 0.044 3.956 10 C 0.200 3.800 11 C -0.512 4.512 12 H 0.067 0.933 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.901 3.099 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 H 0.079 0.921 20 H 0.062 0.938 21 H 0.090 0.910 22 H 0.144 0.856 23 H 0.165 0.835 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.027 0.973 28 H 0.011 0.989 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 10.701 -6.872 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.160 4.160 4 C -0.144 4.144 5 N -0.090 5.090 6 N -0.115 5.115 7 C 0.024 3.976 8 N -0.214 5.214 9 C -0.104 4.104 10 C 0.077 3.923 11 C -0.550 4.550 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.729 3.271 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 H 0.097 0.903 20 H 0.081 0.919 21 H 0.109 0.891 22 H 0.162 0.838 23 H 0.182 0.818 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.029 0.971 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.360 9.838 -6.708 11.984 hybrid contribution -0.982 -0.059 0.343 1.042 sum -2.342 9.779 -6.365 11.900 Atomic orbital electron populations 1.20665 0.88747 1.03475 1.03163 1.21063 0.98819 0.92022 0.95630 1.22229 0.95029 0.98992 0.99782 1.24156 0.93441 0.98643 0.98191 1.72808 1.32187 0.95102 1.08868 1.73318 1.08427 1.19775 1.09952 1.21843 0.88989 0.94227 0.92541 1.60490 1.52357 1.02021 1.06504 1.22209 1.00509 0.97680 0.89973 1.19842 0.96498 0.92121 0.83850 1.21113 1.18168 1.07972 1.07774 0.91490 1.24992 0.95757 0.98209 0.95521 1.69983 1.34437 1.37767 1.11199 0.86395 0.80524 0.82178 0.78041 1.19560 1.21014 1.20987 0.90293 0.91928 0.89093 0.83814 0.81813 0.89846 0.93827 0.94740 0.95508 0.97117 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.86 36.01 0.36 -1.06 15 2 C -0.06 -1.03 5.95 -104.04 -0.62 -1.65 15 3 C -0.13 -1.76 9.93 -39.25 -0.39 -2.15 15 4 C 0.02 0.30 11.31 -17.36 -0.20 0.10 15 5 N -0.25 -4.75 11.49 30.57 0.35 -4.40 15 6 N -0.27 -5.89 11.05 31.23 0.35 -5.55 15 7 C 0.26 5.34 5.31 -154.76 -0.82 4.52 15 8 N -0.49 -10.81 3.77 -182.29 -0.69 -11.50 15 9 C 0.04 0.88 9.10 60.06 0.55 1.42 15 10 C 0.20 5.36 4.51 -4.98 -0.02 5.34 15 11 C -0.51 -14.21 8.58 -34.44 -0.30 -14.50 15 12 H 0.07 1.80 7.10 -52.49 -0.37 1.43 15 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 14 N -0.89 -26.85 13.29 55.43 0.74 -26.11 15 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 15 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.06 0.65 8.12 -51.93 -0.42 0.23 15 21 H 0.09 1.37 7.50 -51.93 -0.39 0.98 15 22 H 0.14 1.32 8.06 -52.49 -0.42 0.89 15 23 H 0.16 1.66 8.06 -52.49 -0.42 1.24 15 24 H 0.08 1.66 7.01 -51.93 -0.36 1.30 15 25 H 0.04 0.75 8.06 -51.94 -0.42 0.34 15 26 H 0.03 0.73 8.04 -51.93 -0.42 0.31 15 27 H 0.03 0.78 8.06 -51.93 -0.42 0.36 15 28 H 0.01 0.32 8.07 -51.93 -0.42 -0.10 15 29 H 0.26 7.39 8.31 -40.82 -0.34 7.06 15 LS Contribution 255.00 15.07 3.84 3.84 Total: -1.00 -31.97 255.00 -5.60 -37.57 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -3.62 Total: -3.75 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.54 Total: -6.47 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.74 Total: -47.56 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.97 -5.60 -37.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953028617.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.736 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds