Wall clock time and date at job start Thu Apr 9 2020 14:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39013 * 126.77379 * 2 1 4 4 C 1.41498 * 126.01940 * 0.07093 * 3 2 1 5 5 H 1.08004 * 120.00070 * 359.97438 * 4 3 2 6 6 C 1.39740 * 120.00067 * 179.97438 * 4 3 2 7 7 N 1.30988 * 119.99582 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00013 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47272 * 59.99843 * 8 6 4 10 10 H 1.48501 * 109.47107 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47202 * 299.99408 * 8 6 4 12 12 N 1.34841 * 107.96164 * 180.02562 * 3 2 1 13 13 N 1.28674 * 109.63085 * 0.02562 * 12 3 2 14 14 N 1.35017 * 126.76949 * 180.02562 * 2 1 3 15 15 C 1.46500 * 126.49493 * 0.02562 * 14 2 1 16 16 C 1.53001 * 109.47388 * 269.98616 * 15 14 2 17 17 C 1.52999 * 117.49460 * 243.62433 * 16 15 14 18 18 C 1.52991 * 117.49901 * 175.00146 * 16 15 14 19 19 H 1.08993 * 109.47108 * 269.95971 * 1 2 3 20 20 H 1.08999 * 109.46394 * 29.96265 * 1 2 3 21 21 H 1.08995 * 109.46805 * 149.95656 * 1 2 3 22 22 H 0.96997 * 119.99483 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.46801 * 29.98930 * 15 14 2 24 24 H 1.09004 * 109.46972 * 149.98137 * 15 14 2 25 25 H 1.09000 * 115.54716 * 29.32390 * 16 15 14 26 26 H 1.08995 * 117.50417 * 359.97438 * 17 16 15 27 27 H 1.09001 * 117.49782 * 145.02631 * 17 16 15 28 28 H 1.09003 * 117.49639 * 214.97653 * 18 16 15 29 29 H 1.08997 * 117.50049 * 359.97422 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3393 1.1135 0.0000 4 6 1.9207 2.4651 0.0014 5 1 0.8674 2.7043 0.0022 6 6 2.8700 3.4906 0.0018 7 7 4.1473 3.2005 0.0013 8 14 2.3174 5.2750 0.0029 9 1 1.5025 5.5401 1.2157 10 1 3.5084 6.1620 0.0038 11 1 1.5021 5.5414 -1.2092 12 7 3.6156 0.6787 -0.0006 13 7 3.6340 -0.6079 -0.0015 14 7 2.3153 -1.0816 -0.0005 15 6 1.8934 -2.4845 -0.0016 16 6 1.7463 -2.9741 1.4404 17 6 2.6792 -4.0945 1.9046 18 6 1.1983 -4.3863 1.6546 19 1 -0.3633 -0.0007 1.0276 20 1 -0.3632 0.8903 -0.5133 21 1 -0.3633 -0.8896 -0.5145 22 1 4.8063 3.9123 0.0019 23 1 0.9366 -2.5757 -0.5157 24 1 2.6411 -3.0883 -0.5159 25 1 1.4727 -2.2119 2.1700 26 1 3.3973 -4.4830 1.1826 27 1 3.0194 -4.0696 2.9399 28 1 0.5642 -4.5534 2.5253 29 1 0.9420 -4.9665 0.7681 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958541188.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:53 Heat of formation + Delta-G solvation = 105.898475 kcal Electronic energy + Delta-G solvation = -13178.126302 eV Core-core repulsion = 10910.914003 eV Total energy + Delta-G solvation = -2267.212299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.92991 -37.34192 -33.50622 -32.57002 -30.69769 -27.40168 -26.23438 -24.36798 -22.33083 -21.01454 -20.17423 -18.95808 -17.19575 -15.53070 -14.90101 -14.85044 -14.48400 -13.47791 -13.30949 -12.70817 -12.37827 -12.03129 -11.72874 -11.47922 -11.45695 -11.06216 -11.02581 -10.66782 -10.42710 -10.20077 -9.93095 -9.66362 -9.23409 -8.80925 -8.37136 -7.32726 -6.31174 -4.10382 2.86909 3.21063 3.23304 3.25142 3.59073 3.93053 4.17876 4.36793 4.82205 4.95092 5.05841 5.43384 5.57920 5.58848 5.62337 5.77074 5.92690 5.99748 6.04044 6.13514 6.32537 6.39252 6.64752 6.97434 7.20003 7.47129 7.58280 8.23324 8.47534 8.88885 9.14230 10.27446 10.65854 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.060786 B = 0.008000 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.525362 B = 3499.331695 C = 3762.332847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.120 4.120 3 C 0.150 3.850 4 C -0.452 4.452 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.778 5.778 8 Si 0.907 3.093 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.229 5.229 13 N -0.133 5.133 14 N -0.375 5.375 15 C 0.170 3.830 16 C -0.163 4.163 17 C -0.174 4.174 18 C -0.177 4.177 19 H 0.050 0.950 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.272 0.728 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 -9.011 1.461 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.251 4.251 3 C 0.020 3.980 4 C -0.488 4.488 5 H 0.098 0.902 6 C -0.146 4.146 7 N -0.405 5.405 8 Si 0.732 3.268 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.101 5.101 13 N -0.109 5.109 14 N -0.171 5.171 15 C 0.045 3.955 16 C -0.183 4.183 17 C -0.211 4.211 18 C -0.215 4.215 19 H 0.069 0.931 20 H 0.089 0.911 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.126 0.874 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.052 -9.318 1.442 10.697 hybrid contribution -1.304 0.980 0.094 1.633 sum -6.355 -8.338 1.537 10.596 Atomic orbital electron populations 1.19778 0.88829 1.01095 1.00507 1.21497 0.93644 0.87503 1.22445 1.18999 0.85981 0.93374 0.99634 1.18488 0.93807 0.87623 1.48902 0.90197 1.25778 0.94610 1.00637 0.93571 1.70015 1.00754 1.33812 1.35879 0.86414 0.78646 0.82320 0.79380 1.19376 1.20663 1.19366 1.75080 1.20160 0.99615 1.15195 1.81490 0.96801 1.07153 1.25407 1.49428 1.06868 1.04535 1.56299 1.20877 1.00250 0.79949 0.94379 1.22725 1.05034 0.92043 0.98505 1.23007 0.92846 1.02757 1.02469 1.22945 0.96994 0.98330 1.03234 0.93137 0.91089 0.93908 0.91772 0.89863 0.89823 0.87407 0.88584 0.88958 0.88822 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.80 9.94 36.01 0.36 -0.44 15 2 C -0.12 -2.88 7.11 -80.90 -0.58 -3.46 15 3 C 0.15 4.28 6.72 -85.02 -0.57 3.71 15 4 C -0.45 -12.63 9.11 -37.78 -0.34 -12.98 15 5 H 0.08 2.05 7.30 -52.48 -0.38 1.67 15 6 C 0.07 1.98 5.49 -17.35 -0.10 1.89 15 7 N -0.78 -22.60 11.92 55.54 0.66 -21.94 15 8 Si 0.91 19.94 29.56 -169.99 -5.02 14.92 15 9 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 12 N -0.23 -6.88 10.55 32.05 0.34 -6.54 15 13 N -0.13 -3.58 13.74 60.35 0.83 -2.75 15 14 N -0.38 -8.55 3.63 -56.17 -0.20 -8.76 15 15 C 0.17 2.81 6.58 -4.04 -0.03 2.78 15 16 C -0.16 -2.41 6.01 -90.62 -0.54 -2.96 15 17 C -0.17 -2.21 10.18 -26.73 -0.27 -2.49 15 18 C -0.18 -1.96 10.25 -26.74 -0.27 -2.23 15 19 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.07 1.31 7.56 -51.93 -0.39 0.91 15 21 H 0.04 0.67 7.20 -51.93 -0.37 0.30 15 22 H 0.27 7.25 8.30 -40.82 -0.34 6.91 15 23 H 0.08 1.19 7.17 -51.93 -0.37 0.82 15 24 H 0.08 1.30 7.88 -51.93 -0.41 0.89 15 25 H 0.11 1.82 8.14 -51.93 -0.42 1.39 15 26 H 0.10 1.17 8.03 -51.93 -0.42 0.76 15 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 256.27 15.07 3.86 3.86 Total: -1.00 -32.54 256.27 -5.48 -38.02 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.60 Total: -0.64 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.35 Total: -16.17 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 1.63 Total: -39.99 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.54 -5.48 -38.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958541188.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.916 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds