Wall clock time and date at job start Thu Apr 9 2020 14:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47188 * 283.86120 * 3 2 1 5 5 C 1.37186 * 120.00447 * 95.98038 * 4 3 2 6 6 H 1.08003 * 120.00170 * 162.23412 * 5 4 3 7 7 C 1.38888 * 119.99918 * 341.96564 * 5 4 3 8 8 N 1.31473 * 119.99426 * 337.44361 * 7 5 4 9 9 Si 1.86799 * 119.99928 * 157.44361 * 7 5 4 10 10 H 1.48499 * 109.46910 * 90.00115 * 9 7 5 11 11 H 1.48499 * 109.46835 * 209.99913 * 9 7 5 12 12 H 1.48497 * 109.47431 * 329.99640 * 9 7 5 13 13 C 1.34781 * 119.99905 * 275.98433 * 4 3 2 14 14 O 1.21573 * 120.00183 * 179.97438 * 13 4 3 15 15 N 1.34781 * 119.99918 * 359.97438 * 13 4 3 16 16 C 1.46492 * 120.00004 * 179.97438 * 15 13 4 17 17 C 1.53001 * 117.50193 * 223.74763 * 16 15 13 18 18 C 1.53004 * 117.50103 * 155.08823 * 16 15 13 19 19 H 4.40647 * 5.51397 * 179.97438 * 4 1 2 20 20 H 1.09002 * 109.46749 * 163.85688 * 3 2 1 21 21 H 1.09000 * 109.47181 * 43.85643 * 3 2 1 22 22 H 0.97002 * 119.99598 * 180.02562 * 8 7 5 23 23 H 0.97000 * 119.99966 * 0.02562 * 15 13 4 24 24 H 1.08998 * 115.55239 * 9.42039 * 16 15 13 25 25 H 1.09006 * 117.49452 * 359.97438 * 17 16 15 26 26 H 1.08996 * 117.50170 * 145.02074 * 17 16 15 27 27 H 1.08994 * 117.50353 * 214.98308 * 18 16 15 28 28 H 1.09008 * 117.49363 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3300 1.3410 5 6 3.4804 -1.6221 1.6458 6 1 4.0975 -1.8268 2.5083 7 6 3.0326 -2.6674 0.8485 8 7 1.9617 -2.5123 0.1018 9 14 3.9518 -4.2935 0.8372 10 1 3.3948 -5.1842 1.8867 11 1 3.7997 -4.9388 -0.4916 12 1 5.3916 -4.0502 1.1073 13 6 3.2440 0.6352 2.2753 14 8 3.6489 0.3607 3.3883 15 7 2.9045 1.9047 1.9758 16 6 3.0229 2.9537 2.9914 17 6 1.8691 3.9508 3.1152 18 6 3.2008 4.3928 2.5034 19 1 -1.0500 0.0002 0.0001 20 1 3.0088 0.9880 -0.2857 21 1 3.0097 -0.7402 -0.7120 22 1 1.6486 -3.2425 -0.4548 23 1 2.5811 2.1236 1.0879 24 1 3.5393 2.6654 3.9070 25 1 1.0220 3.8265 2.4405 26 1 1.6266 4.3187 4.1121 27 1 3.8338 5.0514 3.0980 28 1 3.2300 4.5590 1.4264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300803355.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:21 Heat of formation + Delta-G solvation = 72.969645 kcal Electronic energy + Delta-G solvation = -13483.882636 eV Core-core repulsion = 11117.523774 eV Total energy + Delta-G solvation = -2366.358862 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.16438 -36.82340 -35.04214 -32.40474 -31.50992 -30.84823 -26.40568 -24.63552 -22.15856 -21.54018 -19.71393 -17.87469 -17.42306 -16.43733 -15.79268 -14.69239 -14.27279 -14.13822 -13.81173 -12.89169 -12.76820 -12.34622 -12.10804 -11.53098 -11.38874 -10.94574 -10.85511 -10.47882 -10.26674 -10.17750 -9.39289 -9.23594 -8.91962 -8.75329 -8.06752 -7.75160 -6.21995 -3.73907 3.22925 3.30534 3.35344 3.60167 3.94108 4.04932 4.08171 4.35210 4.47797 5.11815 5.13130 5.28796 5.32015 5.35229 5.56141 5.78842 6.00967 6.20259 6.27137 6.33347 6.73499 7.03122 7.33142 7.56081 7.67938 8.41261 8.73900 8.83371 9.24145 9.52738 10.09194 10.81151 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041528 B = 0.010117 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.089200 B = 2766.987534 C = 3249.391518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.117 4.117 3 C 0.237 3.763 4 N -0.465 5.465 5 C -0.301 4.301 6 H 0.103 0.897 7 C 0.026 3.974 8 N -0.872 5.872 9 Si 0.921 3.079 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.668 3.332 14 O -0.615 6.615 15 N -0.730 5.730 16 C 0.118 3.882 17 C -0.205 4.205 18 C -0.201 4.201 19 H 0.198 0.802 20 H 0.055 0.945 21 H 0.111 0.889 22 H 0.265 0.735 23 H 0.389 0.611 24 H 0.133 0.867 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 8.914 -1.882 9.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.119 4.119 3 C 0.113 3.887 4 N -0.188 5.188 5 C -0.428 4.428 6 H 0.120 0.880 7 C -0.177 4.177 8 N -0.510 5.510 9 Si 0.747 3.253 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.371 3.629 14 O -0.497 6.497 15 N -0.385 5.385 16 C 0.010 3.990 17 C -0.244 4.244 18 C -0.240 4.240 19 H 0.215 0.785 20 H 0.072 0.928 21 H 0.128 0.872 22 H 0.075 0.925 23 H 0.224 0.776 24 H 0.151 0.849 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.068 8.494 -1.228 8.583 hybrid contribution -0.335 -0.771 -0.607 1.037 sum -0.267 7.723 -1.834 7.942 Atomic orbital electron populations 1.24259 0.95365 1.06148 1.02021 1.23302 0.94477 0.95565 0.98520 1.18119 0.84155 0.98674 0.87734 1.42917 1.61125 1.07059 1.07676 1.19515 1.29234 0.80008 1.14064 0.87971 1.25209 0.95309 0.99109 0.98077 1.70129 1.19126 1.33206 1.28567 0.86029 0.80173 0.81730 0.77325 1.20618 1.21031 1.19535 1.15967 0.82205 0.80161 0.84558 1.90724 1.56086 1.81539 1.21335 1.44608 1.72613 1.06897 1.14381 1.21197 1.00495 0.82775 0.94521 1.23419 0.92929 1.05654 1.02390 1.23370 1.00466 0.99033 1.01149 0.78473 0.92760 0.87165 0.92481 0.77616 0.84903 0.88928 0.88623 0.88497 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.46 19.25 29.55 0.57 -4.89 15 2 C -0.12 -2.64 11.35 -37.12 -0.42 -3.06 15 3 C 0.24 5.28 4.81 -6.83 -0.03 5.25 15 4 N -0.46 -11.99 2.60 -123.32 -0.32 -12.31 15 5 C -0.30 -8.43 9.31 -14.92 -0.14 -8.57 15 6 H 0.10 3.01 7.40 -52.48 -0.39 2.63 15 7 C 0.03 0.68 4.83 -17.46 -0.08 0.60 15 8 N -0.87 -23.37 9.58 55.49 0.53 -22.84 15 9 Si 0.92 20.84 29.61 -169.99 -5.03 15.81 15 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 12 H -0.27 -6.08 7.11 56.52 0.40 -5.67 15 13 C 0.67 16.83 8.17 -86.91 -0.71 16.12 15 14 O -0.62 -17.60 15.56 5.30 0.08 -17.51 15 15 N -0.73 -14.44 5.43 -58.68 -0.32 -14.76 15 16 C 0.12 1.99 6.43 -67.93 -0.44 1.56 15 17 C -0.20 -2.78 10.46 -26.69 -0.28 -3.06 15 18 C -0.20 -2.55 10.46 -26.69 -0.28 -2.83 15 19 H 0.20 3.41 7.80 -54.09 -0.42 2.99 15 20 H 0.05 1.00 6.69 -51.93 -0.35 0.65 15 21 H 0.11 2.59 6.51 -51.93 -0.34 2.25 15 22 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 23 H 0.39 6.91 6.55 -40.82 -0.27 6.64 15 24 H 0.13 2.43 7.40 -51.93 -0.38 2.04 15 25 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.10 1.06 8.14 -51.93 -0.42 0.63 15 28 H 0.09 1.09 8.14 -51.92 -0.42 0.67 15 LS Contribution 252.40 15.07 3.80 3.80 Total: -1.00 -31.71 252.40 -6.04 -37.75 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.97 Total: 8.95 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.81 Total: 1.12 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.11 Total: -49.91 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.08 Total: -17.51 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.71 -6.04 -37.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300803355.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.719 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds