Wall clock time and date at job start Thu Apr 9 2020 14:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47188 * 283.86120 * 3 2 1 5 5 C 1.37186 * 120.00447 * 95.98038 * 4 3 2 6 6 H 1.08003 * 120.00170 * 162.23412 * 5 4 3 7 7 C 1.38888 * 119.99918 * 341.96564 * 5 4 3 8 8 N 1.31473 * 119.99426 * 337.44361 * 7 5 4 9 9 Si 1.86799 * 119.99928 * 157.44361 * 7 5 4 10 10 H 1.48499 * 109.46910 * 90.00115 * 9 7 5 11 11 H 1.48499 * 109.46835 * 209.99913 * 9 7 5 12 12 H 1.48497 * 109.47431 * 329.99640 * 9 7 5 13 13 C 1.34781 * 119.99905 * 275.98433 * 4 3 2 14 14 O 1.21573 * 120.00183 * 179.97438 * 13 4 3 15 15 N 1.34781 * 119.99918 * 359.97438 * 13 4 3 16 16 C 1.46492 * 120.00004 * 179.97438 * 15 13 4 17 17 C 1.53001 * 117.50193 * 223.74763 * 16 15 13 18 18 C 1.53004 * 117.50103 * 155.08823 * 16 15 13 19 19 H 4.40647 * 5.51397 * 179.97438 * 4 1 2 20 20 H 1.09002 * 109.46749 * 163.85688 * 3 2 1 21 21 H 1.09000 * 109.47181 * 43.85643 * 3 2 1 22 22 H 0.97002 * 119.99598 * 180.02562 * 8 7 5 23 23 H 0.97000 * 119.99966 * 0.02562 * 15 13 4 24 24 H 1.08998 * 115.55239 * 9.42039 * 16 15 13 25 25 H 1.09006 * 117.49452 * 359.97438 * 17 16 15 26 26 H 1.08996 * 117.50170 * 145.02074 * 17 16 15 27 27 H 1.08994 * 117.50353 * 214.98308 * 18 16 15 28 28 H 1.09008 * 117.49363 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3300 1.3410 5 6 3.4804 -1.6221 1.6458 6 1 4.0975 -1.8268 2.5083 7 6 3.0326 -2.6674 0.8485 8 7 1.9617 -2.5123 0.1018 9 14 3.9518 -4.2935 0.8372 10 1 3.3948 -5.1842 1.8867 11 1 3.7997 -4.9388 -0.4916 12 1 5.3916 -4.0502 1.1073 13 6 3.2440 0.6352 2.2753 14 8 3.6489 0.3607 3.3883 15 7 2.9045 1.9047 1.9758 16 6 3.0229 2.9537 2.9914 17 6 1.8691 3.9508 3.1152 18 6 3.2008 4.3928 2.5034 19 1 -1.0500 0.0002 0.0001 20 1 3.0088 0.9880 -0.2857 21 1 3.0097 -0.7402 -0.7120 22 1 1.6486 -3.2425 -0.4548 23 1 2.5811 2.1236 1.0879 24 1 3.5393 2.6654 3.9070 25 1 1.0220 3.8265 2.4405 26 1 1.6266 4.3187 4.1121 27 1 3.8338 5.0514 3.0980 28 1 3.2300 4.5590 1.4264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300803355.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:21 Heat of formation + Delta-G solvation = 52.242176 kcal Electronic energy + Delta-G solvation = -13484.781447 eV Core-core repulsion = 11117.523774 eV Total energy + Delta-G solvation = -2367.257672 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.96499 -38.22113 -36.95106 -34.25886 -33.22641 -32.66396 -28.23549 -26.56858 -23.20129 -23.01993 -21.43829 -19.68887 -19.21354 -18.26092 -17.33387 -16.53228 -16.10001 -15.66591 -15.35850 -14.73539 -14.50844 -14.00797 -13.60160 -13.42189 -12.75795 -12.49615 -12.38565 -12.24747 -12.08908 -11.36866 -11.21965 -11.14398 -10.83189 -10.58925 -9.87637 -9.45193 -8.24727 -5.83401 1.41518 1.45020 1.57256 1.88511 2.25514 2.37317 2.38798 2.55505 3.02201 3.22660 3.61382 3.87152 3.92396 4.15961 4.20532 4.58100 4.79850 4.85414 4.94973 5.06978 5.27469 5.40503 5.52923 5.77310 5.86205 6.37814 6.87051 7.14316 7.22927 7.60908 8.15214 8.76179 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041528 B = 0.010117 C = 0.008615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.089200 B = 2766.987534 C = 3249.391518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.157 4.157 3 C 0.240 3.760 4 N -0.478 5.478 5 C -0.337 4.337 6 H 0.073 0.927 7 C -0.002 4.002 8 N -0.881 5.881 9 Si 0.985 3.015 10 H -0.282 1.282 11 H -0.270 1.270 12 H -0.271 1.271 13 C 0.659 3.341 14 O -0.663 6.663 15 N -0.714 5.714 16 C 0.067 3.933 17 C -0.188 4.188 18 C -0.165 4.165 19 H 0.232 0.768 20 H 0.091 0.909 21 H 0.094 0.906 22 H 0.268 0.732 23 H 0.400 0.600 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 9.991 -2.887 10.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.159 4.159 3 C 0.117 3.883 4 N -0.200 5.200 5 C -0.465 4.465 6 H 0.091 0.909 7 C -0.204 4.204 8 N -0.519 5.519 9 Si 0.809 3.191 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.195 1.195 13 C 0.362 3.638 14 O -0.548 6.548 15 N -0.369 5.369 16 C -0.040 4.040 17 C -0.227 4.227 18 C -0.203 4.203 19 H 0.248 0.752 20 H 0.108 0.892 21 H 0.112 0.888 22 H 0.078 0.922 23 H 0.237 0.763 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.131 0.869 27 H 0.138 0.862 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.701 9.632 -2.270 9.920 hybrid contribution -0.171 -1.043 -0.282 1.093 sum -0.872 8.589 -2.552 9.002 Atomic orbital electron populations 1.25129 0.96353 1.04548 1.00240 1.23560 0.95098 0.97080 1.00118 1.18163 0.84497 1.00008 0.85641 1.43025 1.61418 1.06567 1.09030 1.19420 1.30649 0.81915 1.14553 0.90907 1.25906 0.95614 1.01771 0.97157 1.70223 1.19310 1.34130 1.28250 0.85074 0.78756 0.77565 0.77674 1.20850 1.19441 1.19529 1.16249 0.81992 0.81637 0.83953 1.90666 1.58150 1.82699 1.23294 1.44366 1.71551 1.05580 1.15450 1.21389 1.04504 0.84031 0.94042 1.23491 0.92831 1.02779 1.03628 1.23474 0.99522 0.94937 1.02385 0.75152 0.89158 0.88816 0.92171 0.76332 0.87368 0.88613 0.86933 0.86168 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.80 19.25 74.32 1.43 -8.37 15 2 C -0.16 -6.95 11.35 31.13 0.35 -6.60 15 3 C 0.24 10.67 4.81 84.57 0.41 11.07 15 4 N -0.48 -25.21 2.60 -662.33 -1.72 -26.93 15 5 C -0.34 -19.55 9.31 84.01 0.78 -18.77 15 6 H 0.07 4.54 7.40 -2.91 -0.02 4.52 15 7 C 0.00 -0.13 4.83 84.90 0.41 0.28 15 8 N -0.88 -47.00 9.58 21.66 0.21 -46.79 15 9 Si 0.99 43.01 29.61 68.60 2.03 45.04 15 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 11 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 13 C 0.66 34.14 8.17 179.05 1.46 35.61 15 14 O -0.66 -39.71 15.56 -3.95 -0.06 -39.77 15 15 N -0.71 -28.11 5.43 -457.83 -2.49 -30.59 15 16 C 0.07 2.21 6.43 44.99 0.29 2.50 15 17 C -0.19 -4.63 10.46 30.62 0.32 -4.31 15 18 C -0.16 -3.65 10.46 30.62 0.32 -3.33 15 19 H 0.23 7.22 7.80 -4.42 -0.03 7.19 15 20 H 0.09 3.23 6.69 -2.39 -0.02 3.22 15 21 H 0.09 4.43 6.51 -2.39 -0.02 4.42 15 22 H 0.27 13.58 8.31 -92.71 -0.77 12.81 15 23 H 0.40 13.70 6.55 -92.71 -0.61 13.09 15 24 H 0.11 4.08 7.40 -2.39 -0.02 4.07 15 25 H 0.10 2.33 8.14 -2.38 -0.02 2.31 15 26 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 27 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 28 H 0.11 2.10 8.14 -2.38 -0.02 2.08 15 Total: -1.00 -70.13 252.40 4.30 -65.83 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.56 Total: 25.12 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.77 Total: 8.10 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.00 Total: -104.32 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.06 Total: -39.77 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.13 4.30 -65.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300803355.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.073 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds