Wall clock time and date at job start Thu Apr 9 2020 14:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00488 * 2 1 4 4 H 1.48498 * 109.47132 * 270.00209 * 3 2 1 5 5 H 1.48505 * 109.47022 * 29.99621 * 3 2 1 6 6 H 1.48500 * 109.47183 * 150.00114 * 3 2 1 7 7 C 1.37882 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99842 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.70664 * 59.47603 * 9 7 2 11 11 C 1.53445 * 109.67802 * 180.02562 * 9 7 2 12 12 C 1.53123 * 109.02561 * 168.48903 * 11 9 7 13 13 C 1.53069 * 109.68577 * 289.52106 * 12 11 9 14 14 C 1.51948 * 108.70151 * 51.65141 * 13 12 11 15 15 C 1.38465 * 124.73939 * 162.15618 * 14 13 12 16 16 N 1.29893 * 117.53140 * 180.09691 * 15 14 13 17 17 S 1.69670 * 107.13258 * 359.97438 * 16 15 14 18 18 C 1.35832 * 121.96480 * 342.20640 * 14 13 12 19 19 H 0.97005 * 119.99487 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.54640 * 48.62677 * 11 9 7 21 21 H 1.09001 * 109.55014 * 288.34772 * 11 9 7 22 22 H 1.09002 * 109.42850 * 49.57571 * 12 11 9 23 23 H 1.09002 * 109.43136 * 169.46996 * 12 11 9 24 24 H 1.08999 * 109.60692 * 171.35224 * 13 12 11 25 25 H 1.08995 * 109.60990 * 291.85933 * 13 12 11 26 26 H 1.08007 * 121.23275 * 0.07275 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6154 -2.5566 -0.8843 11 6 2.2437 -3.6691 -0.0005 12 6 1.4851 -4.9675 0.2883 13 6 1.0245 -4.9817 1.7480 14 6 0.2844 -3.6868 2.0380 15 6 -0.5653 -3.4872 3.1129 16 7 -1.1279 -2.3219 3.2253 17 16 -0.5878 -1.3784 1.9227 18 6 0.4046 -2.5953 1.2384 19 1 -0.4849 0.8401 -0.0004 20 1 2.9973 -3.5079 0.7703 21 1 2.7263 -3.7380 -0.9755 22 1 0.6164 -5.0333 -0.3667 23 1 2.1412 -5.8188 0.1069 24 1 0.3573 -5.8278 1.9128 25 1 1.8910 -5.0628 2.4042 26 1 -0.7536 -4.2717 3.8311 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259657953.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:47 Heat of formation + Delta-G solvation = -1.928144 kcal Electronic energy + Delta-G solvation = -11865.697687 eV Core-core repulsion = 9841.125222 eV Total energy + Delta-G solvation = -2024.572465 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.05200 -37.06405 -34.82553 -31.64446 -30.57748 -27.11882 -24.78730 -23.55516 -21.79669 -18.93139 -18.81817 -17.96062 -16.55871 -15.79417 -15.45387 -14.60670 -14.41660 -14.31616 -14.07707 -13.73576 -12.95092 -12.78607 -12.74711 -12.27303 -12.01105 -11.80169 -11.52842 -11.34723 -11.29924 -10.75821 -10.03925 -9.54696 -8.94350 -8.18624 -6.42924 0.48554 1.31520 1.43469 1.45146 1.52577 1.87839 2.03386 2.36382 3.04154 4.12882 4.20919 4.26768 4.43144 4.66827 4.85666 4.95694 4.96168 5.05830 5.19187 5.30131 5.40304 5.55670 5.59647 5.75232 5.77757 6.08921 6.34625 6.64989 7.21329 8.69352 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.034953 B = 0.015576 C = 0.011591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.894217 B = 1797.183997 C = 2414.998118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.070 0.930 9 C 0.093 3.907 10 H 0.023 0.977 11 C -0.099 4.099 12 C -0.114 4.114 13 C -0.032 4.032 14 C -0.232 4.232 15 C 0.078 3.922 16 N -0.615 5.615 17 S 0.344 5.656 18 C -0.146 4.146 19 H 0.280 0.720 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -6.521 0.803 7.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.188 4.188 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.088 0.912 9 C 0.073 3.927 10 H 0.041 0.959 11 C -0.138 4.138 12 C -0.151 4.151 13 C -0.072 4.072 14 C -0.249 4.249 15 C -0.121 4.121 16 N -0.433 5.433 17 S 0.501 5.499 18 C -0.277 4.277 19 H 0.091 0.909 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.645 -4.512 1.350 4.989 hybrid contribution 0.948 -0.440 -0.331 1.096 sum 2.593 -4.952 1.019 5.682 Atomic orbital electron populations 1.68604 1.07026 1.28601 1.49578 1.25810 0.95650 1.02932 0.94400 0.85438 0.78650 0.78577 0.78669 1.19415 1.20584 1.19328 1.21786 0.94061 0.90988 1.47811 0.91222 1.17517 0.92034 0.94765 0.88408 0.95923 1.21597 0.97370 0.93872 1.00976 1.21555 0.99941 0.97632 0.95976 1.20294 0.98490 0.91612 0.96761 1.21074 1.06386 0.99142 0.98263 1.22608 0.95415 0.95899 0.98141 1.76413 1.28332 1.10541 1.28026 1.85738 1.36773 1.16516 1.10917 1.26229 1.01185 0.97320 1.02945 0.90879 0.92897 0.91631 0.93140 0.89085 0.89334 0.90458 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.04 9.12 21.45 0.20 -46.85 15 2 C 0.01 0.39 4.86 84.66 0.41 0.80 15 3 Si 0.96 40.87 29.54 68.60 2.03 42.90 15 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 15 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 7 C -0.51 -25.88 8.52 25.60 0.22 -25.66 15 8 H 0.07 3.45 7.75 -2.91 -0.02 3.43 15 9 C 0.09 4.42 2.45 -12.25 -0.03 4.39 15 10 H 0.02 1.20 8.14 -2.38 -0.02 1.18 15 11 C -0.10 -3.73 5.23 30.78 0.16 -3.57 15 12 C -0.11 -3.49 5.84 30.66 0.18 -3.31 15 13 C -0.03 -0.98 6.19 30.27 0.19 -0.79 15 14 C -0.23 -9.54 5.80 -19.97 -0.12 -9.66 15 15 C 0.08 3.21 11.14 85.03 0.95 4.15 15 16 N -0.62 -29.22 12.09 -62.48 -0.76 -29.98 15 17 S 0.34 17.38 18.99 -56.49 -1.07 16.31 15 18 C -0.15 -7.02 5.66 25.02 0.14 -6.88 15 19 H 0.28 14.15 8.31 -92.70 -0.77 13.38 15 20 H 0.05 2.00 8.07 -2.39 -0.02 1.98 15 21 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.05 1.62 8.10 -2.39 -0.02 1.61 15 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 15 26 H 0.17 5.69 8.06 -2.91 -0.02 5.66 15 Total: -1.00 -57.78 227.76 3.66 -54.12 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.17 Total: 4.01 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 2.10 Total: -40.51 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -0.56 Total: -76.82 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 17.38 SS G_CDS: -1.07 Total: 16.31 kcal Total: -57.78 3.66 -54.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657953.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.189 kcal (2) G-P(sol) polarization free energy of solvation -57.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds