Wall clock time and date at job start Thu Apr 9 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 122.74857 * 2 1 4 4 S 1.76198 * 107.92370 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28168 * 0.02562 * 4 3 2 6 6 C 1.50697 * 124.91252 * 179.73275 * 5 4 3 7 7 C 1.50700 * 115.55314 * 232.91155 * 6 5 4 8 8 H 1.08005 * 119.99928 * 247.96274 * 7 6 5 9 9 C 1.37871 * 119.99766 * 67.95525 * 7 6 5 10 10 N 1.31518 * 120.00461 * 6.38156 * 9 7 6 11 11 Si 1.86804 * 119.99939 * 186.38260 * 9 7 6 12 12 H 1.48502 * 109.47047 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47107 * 119.99859 * 11 9 7 14 14 H 1.48499 * 109.47440 * 240.00104 * 11 9 7 15 15 C 1.53007 * 117.49628 * 87.24625 * 6 5 4 16 16 C 1.53001 * 117.49922 * 18.58406 * 6 5 4 17 17 N 1.29020 * 110.16970 * 0.02562 * 5 4 3 18 18 H 1.08999 * 109.47114 * 89.97099 * 1 2 3 19 19 H 1.08995 * 109.46846 * 209.97281 * 1 2 3 20 20 H 1.09003 * 109.47092 * 329.97331 * 1 2 3 21 21 H 1.07999 * 126.03874 * 0.02562 * 3 2 1 22 22 H 0.96991 * 119.99972 * 179.97438 * 10 9 7 23 23 H 1.09000 * 117.49877 * 359.97438 * 15 6 5 24 24 H 1.09000 * 117.49865 * 145.02486 * 15 6 5 25 25 H 1.09004 * 117.49922 * 214.97320 * 16 6 5 26 26 H 1.09002 * 117.50231 * 0.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5039 -0.9818 0.0002 6 6 4.4835 -2.1270 -0.0053 7 6 4.2787 -3.1524 -1.0904 8 1 3.9575 -4.1516 -0.8355 9 6 4.5011 -2.8150 -2.4086 10 7 5.0112 -1.6408 -2.7098 11 14 4.0780 -4.0257 -3.7668 12 1 3.5214 -5.2658 -3.1688 13 1 3.0712 -3.4193 -4.6744 14 1 5.3045 -4.3542 -4.5369 15 6 4.9977 -2.6232 1.3477 16 6 5.9220 -1.8282 0.4219 17 7 2.2200 -1.1083 -0.0010 18 1 -0.3633 0.0005 -1.0277 19 1 -0.3633 -0.8902 0.5134 20 1 -0.3633 0.8898 0.5143 21 1 1.8392 2.1308 0.0004 22 1 5.1680 -1.4036 -3.6371 23 1 4.6278 -2.1212 2.2416 24 1 5.1883 -3.6913 1.4526 25 1 6.7202 -2.3737 -0.0817 26 1 6.1598 -0.8035 0.7073 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259735010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:04 Heat of formation + Delta-G solvation = 61.124579 kcal Electronic energy + Delta-G solvation = -11565.094778 eV Core-core repulsion = 9543.256484 eV Total energy + Delta-G solvation = -2021.838294 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.88924 -36.32136 -32.08934 -30.91979 -26.94643 -25.78482 -24.00695 -21.36167 -19.79442 -18.54435 -17.02463 -16.04793 -14.71146 -14.50600 -13.99886 -13.49203 -12.95246 -12.57134 -12.19132 -11.90689 -11.80492 -11.11038 -10.99050 -10.63461 -10.51070 -10.27073 -9.92784 -9.34313 -8.96391 -8.48513 -8.37875 -8.24148 -7.62120 -6.13181 -4.17469 1.73862 2.39263 2.82097 3.27137 3.35192 3.39917 3.77649 4.36407 4.96932 5.10561 5.36386 5.71388 5.78161 5.94299 6.00312 6.17159 6.23579 6.30558 6.57606 6.61000 6.80600 6.97208 7.23212 7.28773 7.79843 8.21121 8.81086 8.88962 9.46076 10.95009 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.013815 C = 0.011586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.774099 B = 2026.226210 C = 2416.222618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.070 3.930 3 C -0.313 4.313 4 S 0.079 5.921 5 C 0.175 3.825 6 C 0.100 3.900 7 C -0.476 4.476 8 H 0.069 0.931 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.896 3.104 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.183 4.183 16 C -0.165 4.165 17 N -0.490 5.490 18 H 0.067 0.933 19 H 0.070 0.930 20 H 0.064 0.936 21 H 0.159 0.841 22 H 0.262 0.738 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 4.068 4.546 6.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.452 4.452 4 S 0.338 5.662 5 C -0.103 4.103 6 C 0.096 3.904 7 C -0.515 4.515 8 H 0.087 0.913 9 C -0.134 4.134 10 N -0.506 5.506 11 Si 0.724 3.276 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.223 4.223 16 C -0.203 4.203 17 N -0.204 5.204 18 H 0.086 0.914 19 H 0.089 0.911 20 H 0.083 0.917 21 H 0.176 0.824 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.118 4.278 4.380 6.479 hybrid contribution -1.170 -0.304 -1.039 1.594 sum -3.288 3.975 3.341 6.146 Atomic orbital electron populations 1.20251 0.88555 1.02233 1.02155 1.20243 0.97609 0.87278 1.01236 1.26454 0.96353 1.02779 1.19630 1.83746 1.06857 1.06687 1.68927 1.27251 0.93182 0.95439 0.94428 1.17156 0.88306 0.91319 0.93634 1.20320 1.46374 0.95547 0.89234 0.91286 1.25029 0.94015 0.95550 0.98768 1.70007 1.41259 1.20623 1.18671 0.86458 0.78137 0.81341 0.81707 1.19406 1.20942 1.20881 1.22983 1.06095 0.99752 0.93454 1.22891 0.95878 0.98443 1.03133 1.66046 1.05121 1.29967 1.19235 0.91382 0.91097 0.91696 0.82367 0.92798 0.91077 0.89172 0.88845 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.31 36.01 0.37 -0.78 15 2 C 0.07 1.46 6.74 -84.22 -0.57 0.89 15 3 C -0.31 -6.09 11.13 29.12 0.32 -5.77 15 4 S 0.08 1.68 22.11 -107.50 -2.38 -0.69 15 5 C 0.17 4.32 6.38 -13.46 -0.09 4.23 15 6 C 0.10 2.51 1.79 -156.81 -0.28 2.23 15 7 C -0.48 -13.05 8.80 -34.44 -0.30 -13.35 15 8 H 0.07 1.89 7.82 -52.48 -0.41 1.48 15 9 C 0.07 1.95 5.41 -17.82 -0.10 1.86 15 10 N -0.87 -24.41 13.16 55.43 0.73 -23.68 15 11 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 15 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 15 C -0.18 -3.93 9.94 -26.68 -0.27 -4.20 15 16 C -0.16 -3.71 9.71 -26.69 -0.26 -3.97 15 17 N -0.49 -12.06 10.53 -8.06 -0.08 -12.15 15 18 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 20 H 0.06 0.83 8.12 -51.93 -0.42 0.41 15 21 H 0.16 2.51 8.06 -52.49 -0.42 2.09 15 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.07 1.41 8.14 -51.93 -0.42 0.98 15 24 H 0.09 1.83 8.14 -51.93 -0.42 1.40 15 25 H 0.09 2.13 8.14 -51.93 -0.42 1.71 15 26 H 0.07 1.45 7.39 -51.93 -0.38 1.07 15 LS Contribution 247.28 15.07 3.73 3.73 Total: -1.00 -29.65 247.28 -7.08 -36.73 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -2.89 Total: -1.42 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -1.16 Total: -18.85 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.64 Total: -35.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.38 Total: -0.69 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.65 -7.08 -36.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.854 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds