Wall clock time and date at job start Thu Apr 9 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 122.74857 * 2 1 4 4 S 1.76198 * 107.92370 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28168 * 0.02562 * 4 3 2 6 6 C 1.50697 * 124.91252 * 179.73275 * 5 4 3 7 7 C 1.50700 * 115.55314 * 232.91155 * 6 5 4 8 8 H 1.08005 * 119.99928 * 247.96274 * 7 6 5 9 9 C 1.37871 * 119.99766 * 67.95525 * 7 6 5 10 10 N 1.31518 * 120.00461 * 6.38156 * 9 7 6 11 11 Si 1.86804 * 119.99939 * 186.38260 * 9 7 6 12 12 H 1.48502 * 109.47047 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47107 * 119.99859 * 11 9 7 14 14 H 1.48499 * 109.47440 * 240.00104 * 11 9 7 15 15 C 1.53007 * 117.49628 * 87.24625 * 6 5 4 16 16 C 1.53001 * 117.49922 * 18.58406 * 6 5 4 17 17 N 1.29020 * 110.16970 * 0.02562 * 5 4 3 18 18 H 1.08999 * 109.47114 * 89.97099 * 1 2 3 19 19 H 1.08995 * 109.46846 * 209.97281 * 1 2 3 20 20 H 1.09003 * 109.47092 * 329.97331 * 1 2 3 21 21 H 1.07999 * 126.03874 * 0.02562 * 3 2 1 22 22 H 0.96991 * 119.99972 * 179.97438 * 10 9 7 23 23 H 1.09000 * 117.49877 * 359.97438 * 15 6 5 24 24 H 1.09000 * 117.49865 * 145.02486 * 15 6 5 25 25 H 1.09004 * 117.49922 * 214.97320 * 16 6 5 26 26 H 1.09002 * 117.50231 * 0.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5039 -0.9818 0.0002 6 6 4.4835 -2.1270 -0.0053 7 6 4.2787 -3.1524 -1.0904 8 1 3.9575 -4.1516 -0.8355 9 6 4.5011 -2.8150 -2.4086 10 7 5.0112 -1.6408 -2.7098 11 14 4.0780 -4.0257 -3.7668 12 1 3.5214 -5.2658 -3.1688 13 1 3.0712 -3.4193 -4.6744 14 1 5.3045 -4.3542 -4.5369 15 6 4.9977 -2.6232 1.3477 16 6 5.9220 -1.8282 0.4219 17 7 2.2200 -1.1083 -0.0010 18 1 -0.3633 0.0005 -1.0277 19 1 -0.3633 -0.8902 0.5134 20 1 -0.3633 0.8898 0.5143 21 1 1.8392 2.1308 0.0004 22 1 5.1680 -1.4036 -3.6371 23 1 4.6278 -2.1212 2.2416 24 1 5.1883 -3.6913 1.4526 25 1 6.7202 -2.3737 -0.0817 26 1 6.1598 -0.8035 0.7073 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259735010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:04 Heat of formation + Delta-G solvation = 43.480380 kcal Electronic energy + Delta-G solvation = -11565.859887 eV Core-core repulsion = 9543.256484 eV Total energy + Delta-G solvation = -2022.603403 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.54984 -38.09707 -34.11923 -32.42649 -28.38690 -27.76861 -25.74895 -23.11149 -21.58194 -20.21184 -18.79506 -17.84829 -16.68051 -16.24223 -15.61865 -15.12044 -14.65051 -14.15752 -13.81987 -13.35752 -13.26111 -13.04188 -12.88959 -12.45653 -12.24495 -11.91841 -11.75803 -11.21139 -10.78929 -10.41245 -10.12393 -9.97344 -9.26245 -8.16990 -6.26651 0.08835 0.76660 1.16127 1.37702 1.40613 1.51273 2.11822 2.39819 3.10896 3.34790 3.58051 4.23954 4.39577 4.47760 4.50360 4.58677 4.81110 4.87323 4.90500 5.04712 5.13562 5.29915 5.50849 5.58746 5.73037 6.24382 6.73201 7.22595 7.39139 8.90000 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.013815 C = 0.011586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.774099 B = 2026.226210 C = 2416.222618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.044 3.956 3 C -0.296 4.296 4 S 0.088 5.912 5 C 0.141 3.859 6 C 0.064 3.936 7 C -0.493 4.493 8 H 0.056 0.944 9 C 0.030 3.970 10 N -0.894 5.894 11 Si 0.950 3.050 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.273 1.273 15 C -0.165 4.165 16 C -0.158 4.158 17 N -0.521 5.521 18 H 0.074 0.926 19 H 0.068 0.932 20 H 0.100 0.900 21 H 0.200 0.800 22 H 0.261 0.739 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 4.997 4.854 7.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.435 4.435 4 S 0.346 5.654 5 C -0.137 4.137 6 C 0.060 3.940 7 C -0.533 4.533 8 H 0.074 0.926 9 C -0.173 4.173 10 N -0.530 5.530 11 Si 0.776 3.224 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.204 4.204 16 C -0.196 4.196 17 N -0.236 5.236 18 H 0.093 0.907 19 H 0.087 0.913 20 H 0.119 0.881 21 H 0.217 0.783 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.116 0.884 25 H 0.101 0.899 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.964 5.192 4.699 7.604 hybrid contribution -0.941 -0.533 -1.079 1.528 sum -3.905 4.659 3.619 7.075 Atomic orbital electron populations 1.20372 0.85309 1.03965 1.03076 1.20954 0.99767 0.86711 1.01431 1.26935 0.94807 1.04363 1.17398 1.83546 1.08605 1.04666 1.68556 1.27008 0.93334 0.96888 0.96424 1.17249 0.89702 0.92180 0.94836 1.20523 1.46323 0.95881 0.90538 0.92574 1.25648 0.94065 0.97030 1.00510 1.70089 1.42357 1.21832 1.18760 0.85620 0.77970 0.79546 0.79259 1.19200 1.21389 1.19877 1.23032 1.04251 1.00257 0.92835 1.22798 0.94564 0.99146 1.03124 1.66068 1.05629 1.32318 1.19603 0.90739 0.91305 0.88091 0.78334 0.92971 0.89364 0.88435 0.89896 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.97 10.31 71.24 0.73 -1.23 15 2 C 0.04 1.73 6.74 41.52 0.28 2.01 15 3 C -0.30 -10.69 11.13 66.78 0.74 -9.94 15 4 S 0.09 3.65 22.11 -56.49 -1.25 2.40 15 5 C 0.14 6.90 6.38 88.52 0.56 7.46 15 6 C 0.06 3.24 1.79 -53.67 -0.10 3.14 15 7 C -0.49 -27.42 8.80 25.60 0.23 -27.19 15 8 H 0.06 3.14 7.82 -2.91 -0.02 3.12 15 9 C 0.03 1.63 5.41 84.65 0.46 2.09 15 10 N -0.89 -50.46 13.16 21.45 0.28 -50.18 15 11 Si 0.95 44.13 29.54 68.60 2.03 46.16 15 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 13 H -0.29 -13.44 7.11 99.48 0.71 -12.74 15 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 15 C -0.16 -6.94 9.94 30.62 0.30 -6.64 15 16 C -0.16 -7.07 9.71 30.62 0.30 -6.77 15 17 N -0.52 -25.34 10.53 -179.40 -1.89 -27.23 15 18 H 0.07 2.05 8.14 -2.39 -0.02 2.03 15 19 H 0.07 2.00 8.14 -2.39 -0.02 1.98 15 20 H 0.10 2.16 8.12 -2.39 -0.02 2.14 15 21 H 0.20 5.37 8.06 -2.91 -0.02 5.35 15 22 H 0.26 14.14 8.31 -92.71 -0.77 13.37 15 23 H 0.09 3.37 8.14 -2.39 -0.02 3.35 15 24 H 0.10 3.89 8.14 -2.39 -0.02 3.88 15 25 H 0.08 3.82 8.14 -2.39 -0.02 3.80 15 26 H 0.08 3.34 7.39 -2.39 -0.02 3.32 15 Total: -1.00 -63.11 247.28 3.85 -59.26 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.17 Total: 6.67 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 3.51 Total: -37.08 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.61 Total: -77.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.25 Total: 2.40 kcal Total: -63.11 3.85 -59.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259735010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.743 kcal (2) G-P(sol) polarization free energy of solvation -63.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds