Wall clock time and date at job start Thu Apr 9 2020 14:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48494 * 109.47467 * 270.00769 * 3 2 1 5 5 H 1.48498 * 109.46978 * 30.00610 * 3 2 1 6 6 H 1.48496 * 109.47067 * 150.00043 * 3 2 1 7 7 C 1.37876 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99377 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00342 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.46647 * 60.00273 * 9 7 2 11 11 C 1.52997 * 109.47238 * 300.00471 * 9 7 2 12 12 C 1.53006 * 109.47164 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.46626 * 59.99702 * 12 11 9 14 14 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 15 15 C 1.53006 * 109.47000 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46886 * 59.99999 * 15 13 12 17 17 C 1.52997 * 109.46978 * 60.00414 * 16 15 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 15 19 19 C 1.52997 * 109.47592 * 300.00035 * 13 12 11 20 20 H 1.09001 * 109.47375 * 180.02562 * 19 13 12 21 21 C 1.52996 * 109.47165 * 60.00300 * 19 13 12 22 22 H 0.97005 * 120.00087 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46922 * 59.99800 * 11 9 7 24 24 H 1.09000 * 109.47140 * 299.99500 * 11 9 7 25 25 H 1.08993 * 109.46955 * 180.02562 * 12 11 9 26 26 H 1.09000 * 109.47050 * 300.00004 * 12 11 9 27 27 H 1.09004 * 109.47107 * 300.00294 * 15 13 12 28 28 H 1.09001 * 109.47372 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47142 * 300.00180 * 16 15 13 30 30 H 1.09002 * 109.47097 * 180.02562 * 16 15 13 31 31 H 1.09000 * 109.47140 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 33 33 H 1.09001 * 109.47002 * 300.00262 * 18 17 16 34 34 H 1.08996 * 109.46884 * 180.02562 * 18 17 16 35 35 H 1.08992 * 109.47534 * 180.02562 * 21 19 13 36 36 H 1.08996 * 109.47134 * 59.99508 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 1 3.8751 -0.6804 0.8889 11 6 4.0211 -0.4724 -1.2503 12 6 5.5511 -0.4718 -1.2506 13 6 6.0615 -1.9142 -1.2508 14 1 5.6983 -2.4280 -2.1408 15 6 7.5916 -1.9137 -1.2504 16 6 8.1010 -1.1926 -0.0008 17 6 7.5910 -1.9144 1.2481 18 6 6.0609 -1.9150 1.2477 19 6 5.5520 -2.6358 -0.0016 20 1 5.9160 -3.6632 -0.0016 21 6 4.0220 -2.6363 -0.0014 22 1 -0.4850 0.8401 0.0004 23 1 3.6577 0.5553 -1.2498 24 1 3.6575 -0.9860 -2.1403 25 1 5.9141 0.0426 -2.1402 26 1 5.9144 0.0420 -0.3605 27 1 7.9550 -1.3995 -2.1402 28 1 7.9553 -2.9413 -1.2510 29 1 7.7373 -0.1651 -0.0006 30 1 9.1910 -1.1919 -0.0007 31 1 7.9542 -1.4010 2.1383 32 1 7.9546 -2.9420 1.2479 33 1 5.6972 -0.8874 1.2478 34 1 5.6976 -2.4288 2.1376 35 1 3.6590 -3.1500 0.8887 36 1 3.6588 -3.1501 -0.8914 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:16 Heat of formation + Delta-G solvation = -38.493588 kcal Electronic energy + Delta-G solvation = -14750.021639 eV Core-core repulsion = 12618.202807 eV Total energy + Delta-G solvation = -2131.818832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74540 -35.03592 -32.21681 -31.69650 -29.74769 -28.28438 -24.77387 -22.57157 -21.69746 -21.37071 -19.71415 -17.33382 -16.66827 -15.15859 -15.09995 -14.20616 -13.86010 -13.54025 -13.14629 -12.83206 -12.63221 -12.14492 -11.81654 -11.61223 -11.55557 -11.19527 -11.00657 -10.75089 -10.55177 -10.15793 -10.05943 -9.82162 -9.71630 -9.54625 -9.22717 -8.79019 -8.70486 -8.44047 -6.00904 -3.98533 3.31447 3.41563 3.44383 4.46917 4.95690 5.02080 5.05837 5.30760 5.47817 5.53806 5.63737 5.70341 5.79217 5.85812 5.91454 6.04194 6.20296 6.23890 6.24742 6.27592 6.32191 6.38484 6.52450 6.54223 6.61579 6.65894 6.76394 6.88253 6.91810 7.02737 7.20365 7.39977 7.69459 7.87695 8.61141 9.04275 9.62887 11.12745 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.045208 B = 0.010811 C = 0.010223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.215628 B = 2589.404613 C = 2738.185831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.015 3.985 10 H 0.028 0.972 11 C -0.120 4.120 12 C -0.118 4.118 13 C -0.078 4.078 14 H 0.065 0.935 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.080 4.080 20 H 0.055 0.945 21 C -0.094 4.094 22 H 0.262 0.738 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.021 -2.410 -0.580 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.548 4.548 8 H 0.089 0.911 9 C -0.004 4.004 10 H 0.046 0.954 11 C -0.157 4.157 12 C -0.156 4.156 13 C -0.096 4.096 14 H 0.083 0.917 15 C -0.150 4.150 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.099 4.099 20 H 0.074 0.926 21 C -0.132 4.132 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.858 -2.306 -0.576 15.047 hybrid contribution 0.304 0.991 -0.115 1.042 sum 15.162 -1.315 -0.691 15.235 Atomic orbital electron populations 1.69912 1.06303 1.26751 1.51464 1.25035 0.94658 0.99032 0.94675 0.86827 0.79869 0.83625 0.77763 1.20759 1.22806 1.19057 1.21143 0.89257 0.94274 1.50164 0.91073 1.19155 0.96040 0.92032 0.93171 0.95399 1.21962 0.92568 0.99873 1.01302 1.21737 0.97629 0.95684 1.00501 1.21073 0.93647 0.96760 0.98141 0.91679 1.21568 0.96239 0.99908 0.97329 1.21560 0.99083 1.00037 0.95111 1.21533 0.96744 0.99976 0.97216 1.21675 0.94069 1.02078 0.97781 1.21139 0.97068 0.97617 0.94043 0.92630 1.21463 0.91918 0.99048 1.00730 0.92843 0.93946 0.92493 0.93626 0.92163 0.92652 0.92567 0.91760 0.92955 0.92747 0.92627 0.90925 0.92424 0.92955 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.96 55.43 0.77 -27.46 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.89 22.50 24.37 -169.99 -4.14 18.36 16 4 H -0.28 -6.94 6.87 56.52 0.39 -6.55 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 7 C -0.51 -14.51 9.14 -34.44 -0.31 -14.83 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C 0.01 0.34 1.42 -91.77 -0.13 0.21 16 10 H 0.03 0.68 5.48 -51.93 -0.28 0.39 16 11 C -0.12 -2.61 4.68 -26.73 -0.13 -2.73 16 12 C -0.12 -2.09 4.59 -26.73 -0.12 -2.21 16 13 C -0.08 -1.22 2.47 -90.62 -0.22 -1.44 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.11 -1.47 5.45 -26.73 -0.15 -1.61 16 16 C -0.12 -1.52 5.65 -26.73 -0.15 -1.67 16 17 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 18 C -0.12 -1.86 4.59 -26.76 -0.12 -1.99 16 19 C -0.08 -1.32 2.46 -90.65 -0.22 -1.54 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.09 -1.88 4.67 -26.73 -0.12 -2.01 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.07 4.81 -51.93 -0.25 0.82 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.28 4.81 -51.93 -0.25 1.03 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 254.12 15.07 3.83 3.83 Total: -1.00 -29.59 254.12 -7.44 -37.03 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.96 Total: -2.11 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -1.94 Total: -29.64 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.77 Total: -27.46 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.36 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.59 -7.44 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.466 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds