Wall clock time and date at job start Thu Apr 9 2020 14:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48494 * 109.47467 * 270.00769 * 3 2 1 5 5 H 1.48498 * 109.46978 * 30.00610 * 3 2 1 6 6 H 1.48496 * 109.47067 * 150.00043 * 3 2 1 7 7 C 1.37876 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99377 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00342 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.46647 * 60.00273 * 9 7 2 11 11 C 1.52997 * 109.47238 * 300.00471 * 9 7 2 12 12 C 1.53006 * 109.47164 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.46626 * 59.99702 * 12 11 9 14 14 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 15 15 C 1.53006 * 109.47000 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46886 * 59.99999 * 15 13 12 17 17 C 1.52997 * 109.46978 * 60.00414 * 16 15 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 15 19 19 C 1.52997 * 109.47592 * 300.00035 * 13 12 11 20 20 H 1.09001 * 109.47375 * 180.02562 * 19 13 12 21 21 C 1.52996 * 109.47165 * 60.00300 * 19 13 12 22 22 H 0.97005 * 120.00087 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46922 * 59.99800 * 11 9 7 24 24 H 1.09000 * 109.47140 * 299.99500 * 11 9 7 25 25 H 1.08993 * 109.46955 * 180.02562 * 12 11 9 26 26 H 1.09000 * 109.47050 * 300.00004 * 12 11 9 27 27 H 1.09004 * 109.47107 * 300.00294 * 15 13 12 28 28 H 1.09001 * 109.47372 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47142 * 300.00180 * 16 15 13 30 30 H 1.09002 * 109.47097 * 180.02562 * 16 15 13 31 31 H 1.09000 * 109.47140 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 33 33 H 1.09001 * 109.47002 * 300.00262 * 18 17 16 34 34 H 1.08996 * 109.46884 * 180.02562 * 18 17 16 35 35 H 1.08992 * 109.47534 * 180.02562 * 21 19 13 36 36 H 1.08996 * 109.47134 * 59.99508 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 1 3.8751 -0.6804 0.8889 11 6 4.0211 -0.4724 -1.2503 12 6 5.5511 -0.4718 -1.2506 13 6 6.0615 -1.9142 -1.2508 14 1 5.6983 -2.4280 -2.1408 15 6 7.5916 -1.9137 -1.2504 16 6 8.1010 -1.1926 -0.0008 17 6 7.5910 -1.9144 1.2481 18 6 6.0609 -1.9150 1.2477 19 6 5.5520 -2.6358 -0.0016 20 1 5.9160 -3.6632 -0.0016 21 6 4.0220 -2.6363 -0.0014 22 1 -0.4850 0.8401 0.0004 23 1 3.6577 0.5553 -1.2498 24 1 3.6575 -0.9860 -2.1403 25 1 5.9141 0.0426 -2.1402 26 1 5.9144 0.0420 -0.3605 27 1 7.9550 -1.3995 -2.1402 28 1 7.9553 -2.9413 -1.2510 29 1 7.7373 -0.1651 -0.0006 30 1 9.1910 -1.1919 -0.0007 31 1 7.9542 -1.4010 2.1383 32 1 7.9546 -2.9420 1.2479 33 1 5.6972 -0.8874 1.2478 34 1 5.6976 -2.4288 2.1376 35 1 3.6590 -3.1500 0.8887 36 1 3.6588 -3.1501 -0.8914 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:16 Heat of formation + Delta-G solvation = -55.451819 kcal Electronic energy + Delta-G solvation = -14750.757003 eV Core-core repulsion = 12618.202807 eV Total energy + Delta-G solvation = -2132.554196 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08518 -36.60140 -34.23212 -33.02668 -31.26410 -29.72499 -26.58824 -24.00850 -23.06628 -22.73424 -21.21393 -18.84375 -18.67484 -16.95492 -16.33133 -15.58487 -15.28541 -15.12883 -14.67740 -14.52236 -14.19454 -13.61425 -13.33174 -13.02825 -12.86197 -12.70796 -12.48387 -12.28180 -12.01231 -11.83347 -11.65397 -11.40058 -11.15849 -11.12073 -10.75302 -10.55721 -10.40063 -10.38950 -8.30239 -6.32431 1.28041 1.33010 1.44454 2.31750 3.05623 3.77776 3.85523 3.92233 4.25460 4.33024 4.39984 4.46241 4.58837 4.66373 4.70170 4.73909 4.88327 4.89303 4.90003 4.90437 5.03395 5.08370 5.22053 5.26736 5.32562 5.39329 5.44578 5.45781 5.52688 5.58933 5.67852 5.75002 5.77829 5.90766 6.34489 6.75808 7.32790 8.87138 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.045208 B = 0.010811 C = 0.010223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.215628 B = 2589.404613 C = 2738.185831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.301 1.301 6 H -0.246 1.246 7 C -0.519 4.519 8 H 0.028 0.972 9 C 0.017 3.983 10 H 0.024 0.976 11 C -0.120 4.120 12 C -0.112 4.112 13 C -0.078 4.078 14 H 0.063 0.937 15 C -0.107 4.107 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.120 4.120 19 C -0.074 4.074 20 H 0.076 0.924 21 C -0.092 4.092 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.040 0.960 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.614 -1.958 -0.885 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.229 1.229 6 H -0.170 1.170 7 C -0.557 4.557 8 H 0.046 0.954 9 C -0.002 4.002 10 H 0.042 0.958 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.096 4.096 14 H 0.082 0.918 15 C -0.144 4.144 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.093 4.093 20 H 0.094 0.906 21 C -0.130 4.130 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.474 -1.869 -0.883 18.590 hybrid contribution -0.927 0.741 -0.002 1.187 sum 17.548 -1.128 -0.885 17.606 Atomic orbital electron populations 1.70069 1.08246 1.27856 1.53381 1.25919 0.95423 1.03091 0.94440 0.85778 0.79114 0.78613 0.78526 1.19474 1.22871 1.16983 1.21543 0.92258 0.92628 1.49243 0.95391 1.19095 0.92528 0.94578 0.94011 0.95771 1.21868 0.96029 0.98300 0.99543 1.21692 0.94002 0.97582 1.01670 1.21081 0.96068 0.95051 0.97413 0.91834 1.21526 0.93418 1.01224 0.98223 1.21584 1.00532 0.99283 0.94432 1.21503 0.94108 1.01186 0.98147 1.21657 0.96522 1.00430 0.97125 1.21094 0.93669 0.99241 0.95245 0.90598 1.21399 0.95280 0.96528 0.99749 0.92723 0.95386 0.93462 0.91586 0.91831 0.91291 0.91045 0.92636 0.90588 0.91694 0.91208 0.93083 0.92775 0.94079 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 2 C 0.01 0.44 5.45 84.65 0.46 0.90 16 3 Si 0.95 46.83 24.37 68.60 1.67 48.50 16 4 H -0.27 -12.61 6.87 99.48 0.68 -11.92 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.25 -11.20 6.53 99.48 0.65 -10.55 16 7 C -0.52 -30.69 9.14 25.60 0.23 -30.45 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C 0.02 0.78 1.42 -11.54 -0.02 0.76 16 10 H 0.02 1.17 5.48 -2.39 -0.01 1.15 16 11 C -0.12 -5.11 4.68 30.60 0.14 -4.96 16 12 C -0.11 -3.65 4.59 30.60 0.14 -3.51 16 13 C -0.08 -2.19 2.47 -10.79 -0.03 -2.22 16 14 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 15 C -0.11 -2.26 5.45 30.60 0.17 -2.09 16 16 C -0.12 -2.48 5.65 30.59 0.17 -2.30 16 17 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 18 C -0.12 -3.48 4.59 30.58 0.14 -3.34 16 19 C -0.07 -2.27 2.46 -10.81 -0.03 -2.30 16 20 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 21 C -0.09 -3.70 4.67 30.59 0.14 -3.55 16 22 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 23 H 0.03 1.26 3.27 -2.39 -0.01 1.25 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 2.05 4.81 -2.39 -0.01 2.04 16 27 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.25 6.43 -2.39 -0.02 1.23 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.70 4.81 -2.39 -0.01 1.69 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -65.82 254.12 4.64 -61.18 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.95 Total: 7.11 kcal Atomic # 6 Polarization: -57.04 SS G_CDS: 1.71 Total: -55.33 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.30 Total: -61.46 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.67 Total: 48.50 kcal Total: -65.82 4.64 -61.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.730 kcal (2) G-P(sol) polarization free energy of solvation -65.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds