Wall clock time and date at job start Thu Apr 9 2020 14:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38710 * 127.93561 * 2 1 4 4 N 1.30530 * 112.91766 * 155.60516 * 3 2 1 5 5 C 1.45227 * 108.28818 * 0.89023 * 4 3 2 6 6 H 1.08996 * 107.64133 * 267.13563 * 5 4 3 7 7 C 1.50702 * 122.18522 * 140.00218 * 5 4 3 8 8 C 1.54026 * 106.83664 * 179.03616 * 7 5 4 9 9 H 1.09005 * 108.97843 * 176.64747 * 8 7 5 10 10 C 1.50695 * 108.98446 * 295.45482 * 8 7 5 11 11 H 1.08007 * 119.99783 * 359.97438 * 10 8 7 12 12 C 1.37879 * 120.00349 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99424 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00129 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46871 * 89.99949 * 14 12 10 16 16 H 1.48504 * 109.46917 * 209.99514 * 14 12 10 17 17 H 1.48491 * 109.47268 * 329.99672 * 14 12 10 18 18 C 1.52494 * 111.96192 * 56.01047 * 8 7 5 19 19 C 1.54140 * 111.87388 * 306.66286 * 18 8 7 20 20 C 1.45679 * 127.94126 * 180.02562 * 2 1 3 21 21 H 1.08999 * 110.32744 * 98.47852 * 20 2 1 22 22 H 1.08999 * 109.46440 * 269.97011 * 1 2 3 23 23 H 1.08996 * 109.47249 * 29.97083 * 1 2 3 24 24 H 1.08998 * 109.47096 * 149.97326 * 1 2 3 25 25 H 1.08006 * 123.54289 * 335.62019 * 3 2 1 26 26 H 1.08996 * 109.97844 * 59.70880 * 7 5 4 27 27 H 1.08998 * 109.98340 * 298.36761 * 7 5 4 28 28 H 0.96996 * 119.99635 * 179.97438 * 13 12 10 29 29 H 1.09005 * 108.99979 * 67.28251 * 18 8 7 30 30 H 1.09003 * 109.00038 * 186.12535 * 18 8 7 31 31 H 1.09001 * 110.08439 * 177.14171 * 19 18 8 32 32 H 1.09001 * 110.08799 * 298.76367 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3178 1.0940 0.0000 4 7 3.4938 0.8218 0.4966 5 6 3.5163 -0.5809 0.8722 6 1 3.2279 -0.6466 1.9212 7 6 4.7216 -1.4551 0.6392 8 6 4.3722 -2.8518 1.1864 9 1 5.2004 -3.5302 0.9816 10 6 4.1727 -2.7584 2.6772 11 1 4.2834 -1.8080 3.1783 12 6 3.8499 -3.8862 3.4016 13 7 3.7156 -5.0435 2.7914 14 14 3.6034 -3.7705 5.2496 15 1 2.1771 -3.4775 5.5413 16 1 3.9830 -5.0597 5.8813 17 1 4.4539 -2.6825 5.7953 18 6 3.1036 -3.4119 0.5521 19 6 1.9201 -2.4318 0.6729 20 6 2.3607 -1.1489 -0.0005 21 1 2.7124 -1.3544 -1.0115 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 2.0380 2.0688 -0.3716 26 1 5.5829 -1.0514 1.1713 27 1 4.9368 -1.5162 -0.4276 28 1 3.4889 -5.8370 3.3011 29 1 3.2927 -3.6118 -0.5027 30 1 2.8413 -4.3462 1.0485 31 1 1.0443 -2.8384 0.1671 32 1 1.6944 -2.2450 1.7228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261010660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:05 Heat of formation + Delta-G solvation = 40.727368 kcal Electronic energy + Delta-G solvation = -14308.392313 eV Core-core repulsion = 12076.468416 eV Total energy + Delta-G solvation = -2231.923897 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13143 -35.88875 -32.74544 -32.10139 -29.44900 -27.91522 -26.02326 -24.62318 -21.82250 -20.66904 -19.27310 -18.88920 -15.98457 -15.72053 -15.17780 -14.63117 -14.21158 -13.67677 -13.14300 -12.78732 -12.48891 -12.06425 -11.82907 -11.27589 -11.19256 -10.99597 -10.84176 -10.65016 -10.41021 -10.05440 -9.76943 -9.57260 -9.32086 -8.69670 -8.56587 -8.27823 -7.28157 -5.96799 -4.03139 2.88256 3.30052 3.37315 3.41890 3.62201 4.44461 4.95572 5.22591 5.28683 5.32319 5.57245 5.72437 5.85863 6.02386 6.27032 6.32841 6.39520 6.46672 6.63532 6.72497 6.79585 6.97908 7.16132 7.22759 7.32177 7.53935 7.72833 7.90263 8.09013 8.19592 8.37007 8.47867 8.99378 9.60755 11.06851 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.037874 B = 0.010789 C = 0.010626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.122709 B = 2594.712123 C = 2634.313769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.666 5.666 3 C 0.320 3.680 4 N -0.555 5.555 5 C 0.049 3.951 6 H 0.089 0.911 7 C -0.080 4.080 8 C 0.043 3.957 9 H 0.031 0.969 10 C -0.503 4.503 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.109 4.109 19 C -0.093 4.093 20 C 0.103 3.897 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.176 0.824 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.259 0.741 29 H 0.015 0.985 30 H 0.107 0.893 31 H 0.038 0.962 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 6.942 -5.574 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.392 5.392 3 C 0.023 3.977 4 N -0.278 5.278 5 C -0.061 4.061 6 H 0.106 0.894 7 C -0.118 4.118 8 C 0.024 3.976 9 H 0.049 0.951 10 C -0.541 4.541 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.715 3.285 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.148 4.148 19 C -0.132 4.132 20 C -0.002 4.002 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.192 0.808 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.125 0.875 31 H 0.057 0.943 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.604 7.059 -5.265 10.438 hybrid contribution -0.989 -0.495 0.905 1.429 sum -6.593 6.565 -4.360 10.275 Atomic orbital electron populations 1.21148 0.78384 1.01550 1.00537 1.47968 1.04304 1.05953 1.81010 1.25624 0.87489 0.92637 0.91951 1.74450 1.19943 1.15905 1.17470 1.22302 0.96265 0.87092 1.00450 0.89364 1.21171 0.95597 0.96655 0.98425 1.18803 0.93922 0.89890 0.94986 0.95112 1.21235 1.46385 0.94305 0.92159 0.92696 1.24928 0.95599 0.95453 0.98036 1.69798 1.49127 0.99080 1.35138 0.86674 0.78362 0.77402 0.86101 1.20858 1.21267 1.19939 1.21667 0.95077 1.01071 0.96947 1.21428 0.98360 0.93243 1.00154 1.22265 0.90618 0.88778 0.98497 0.92531 0.93903 0.92203 0.92049 0.80766 0.92485 0.94476 0.93062 0.96643 0.87529 0.94300 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.55 11.17 59.85 0.67 2.22 16 2 N -0.67 -10.84 3.43 -175.33 -0.60 -11.44 16 3 C 0.32 5.14 12.22 -86.89 -1.06 4.08 16 4 N -0.56 -11.03 11.75 -55.62 -0.65 -11.69 16 5 C 0.05 1.06 3.11 -68.41 -0.21 0.85 16 6 H 0.09 2.16 5.98 -51.93 -0.31 1.85 16 7 C -0.08 -1.79 5.49 -27.35 -0.15 -1.94 16 8 C 0.04 1.07 2.53 -91.50 -0.23 0.83 16 9 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 10 C -0.50 -13.55 6.91 -34.44 -0.24 -13.79 16 11 H 0.05 1.51 6.92 -52.48 -0.36 1.15 16 12 C 0.06 1.63 5.27 -17.82 -0.09 1.54 16 13 N -0.89 -24.90 11.07 55.43 0.61 -24.28 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.11 -2.54 5.07 -26.39 -0.13 -2.68 16 19 C -0.09 -1.94 5.52 -26.92 -0.15 -2.09 16 20 C 0.10 2.00 3.01 -67.80 -0.20 1.80 16 21 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 2.77 5.60 -51.93 -0.29 2.48 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.64 7.40 -51.93 -0.38 1.25 16 LS Contribution 252.60 15.07 3.81 3.81 Total: -1.00 -29.14 252.60 -8.35 -37.49 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.69 Total: -0.99 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.81 Total: -9.17 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.64 Total: -47.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.14 -8.35 -37.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.218 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds