Wall clock time and date at job start Thu Apr 9 2020 14:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38710 * 127.93561 * 2 1 4 4 N 1.30530 * 112.91766 * 155.60516 * 3 2 1 5 5 C 1.45227 * 108.28818 * 0.89023 * 4 3 2 6 6 H 1.08996 * 107.64133 * 267.13563 * 5 4 3 7 7 C 1.50702 * 122.18522 * 140.00218 * 5 4 3 8 8 C 1.54026 * 106.83664 * 179.03616 * 7 5 4 9 9 H 1.09005 * 108.97843 * 176.64747 * 8 7 5 10 10 C 1.50695 * 108.98446 * 295.45482 * 8 7 5 11 11 H 1.08007 * 119.99783 * 359.97438 * 10 8 7 12 12 C 1.37879 * 120.00349 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99424 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00129 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46871 * 89.99949 * 14 12 10 16 16 H 1.48504 * 109.46917 * 209.99514 * 14 12 10 17 17 H 1.48491 * 109.47268 * 329.99672 * 14 12 10 18 18 C 1.52494 * 111.96192 * 56.01047 * 8 7 5 19 19 C 1.54140 * 111.87388 * 306.66286 * 18 8 7 20 20 C 1.45679 * 127.94126 * 180.02562 * 2 1 3 21 21 H 1.08999 * 110.32744 * 98.47852 * 20 2 1 22 22 H 1.08999 * 109.46440 * 269.97011 * 1 2 3 23 23 H 1.08996 * 109.47249 * 29.97083 * 1 2 3 24 24 H 1.08998 * 109.47096 * 149.97326 * 1 2 3 25 25 H 1.08006 * 123.54289 * 335.62019 * 3 2 1 26 26 H 1.08996 * 109.97844 * 59.70880 * 7 5 4 27 27 H 1.08998 * 109.98340 * 298.36761 * 7 5 4 28 28 H 0.96996 * 119.99635 * 179.97438 * 13 12 10 29 29 H 1.09005 * 108.99979 * 67.28251 * 18 8 7 30 30 H 1.09003 * 109.00038 * 186.12535 * 18 8 7 31 31 H 1.09001 * 110.08439 * 177.14171 * 19 18 8 32 32 H 1.09001 * 110.08799 * 298.76367 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3178 1.0940 0.0000 4 7 3.4938 0.8218 0.4966 5 6 3.5163 -0.5809 0.8722 6 1 3.2279 -0.6466 1.9212 7 6 4.7216 -1.4551 0.6392 8 6 4.3722 -2.8518 1.1864 9 1 5.2004 -3.5302 0.9816 10 6 4.1727 -2.7584 2.6772 11 1 4.2834 -1.8080 3.1783 12 6 3.8499 -3.8862 3.4016 13 7 3.7156 -5.0435 2.7914 14 14 3.6034 -3.7705 5.2496 15 1 2.1771 -3.4775 5.5413 16 1 3.9830 -5.0597 5.8813 17 1 4.4539 -2.6825 5.7953 18 6 3.1036 -3.4119 0.5521 19 6 1.9201 -2.4318 0.6729 20 6 2.3607 -1.1489 -0.0005 21 1 2.7124 -1.3544 -1.0115 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 2.0380 2.0688 -0.3716 26 1 5.5829 -1.0514 1.1713 27 1 4.9368 -1.5162 -0.4276 28 1 3.4889 -5.8370 3.3011 29 1 3.2927 -3.6118 -0.5027 30 1 2.8413 -4.3462 1.0485 31 1 1.0443 -2.8384 0.1671 32 1 1.6944 -2.2450 1.7228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:05 Heat of formation + Delta-G solvation = 22.523609 kcal Electronic energy + Delta-G solvation = -14309.181688 eV Core-core repulsion = 12076.468416 eV Total energy + Delta-G solvation = -2232.713272 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.65655 -37.64201 -34.20204 -34.01623 -31.13897 -29.64217 -27.36512 -26.53632 -23.45814 -22.33351 -20.89661 -20.55795 -17.99529 -17.08945 -16.75236 -16.47523 -15.69648 -15.35711 -14.78148 -14.54618 -13.83953 -13.66001 -13.22901 -13.00866 -12.90153 -12.80430 -12.65128 -12.47039 -12.18375 -11.84310 -11.44860 -11.32822 -11.22272 -10.68740 -10.37265 -10.14667 -8.67760 -8.06769 -6.19355 1.36858 1.39155 1.48598 1.58093 2.35714 2.41994 3.18107 3.49067 3.87020 4.06374 4.23110 4.40568 4.56484 4.60681 4.67829 4.73788 4.82528 4.85929 4.94812 4.98989 5.04744 5.26079 5.47532 5.49009 5.53850 5.65380 5.75208 5.92342 6.21348 6.41074 6.85364 6.87668 7.02284 7.46594 8.95473 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.037874 B = 0.010789 C = 0.010626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.122709 B = 2594.712123 C = 2634.313769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.665 5.665 3 C 0.342 3.658 4 N -0.601 5.601 5 C 0.054 3.946 6 H 0.048 0.952 7 C -0.073 4.073 8 C 0.042 3.958 9 H 0.000 1.000 10 C -0.513 4.513 11 H 0.041 0.959 12 C 0.018 3.982 13 N -0.912 5.912 14 Si 0.943 3.057 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.276 1.276 18 C -0.105 4.105 19 C -0.081 4.081 20 C 0.112 3.888 21 H 0.059 0.941 22 H 0.040 0.960 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.230 0.770 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 8.415 -6.427 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.390 5.390 3 C 0.047 3.953 4 N -0.326 5.326 5 C -0.057 4.057 6 H 0.066 0.934 7 C -0.111 4.111 8 C 0.023 3.977 9 H 0.018 0.982 10 C -0.551 4.551 11 H 0.059 0.941 12 C -0.180 4.180 13 N -0.553 5.553 14 Si 0.769 3.231 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.201 1.201 18 C -0.143 4.143 19 C -0.119 4.119 20 C 0.006 3.994 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.119 0.881 24 H 0.086 0.914 25 H 0.246 0.754 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.431 8.538 -6.125 12.870 hybrid contribution -0.470 -0.927 1.126 1.532 sum -7.900 7.612 -4.999 12.056 Atomic orbital electron populations 1.21459 0.75548 1.03979 1.01138 1.48160 1.05845 1.04712 1.80318 1.26534 0.85984 0.94078 0.88748 1.74455 1.22582 1.14300 1.21237 1.21993 0.96190 0.88858 0.98626 0.93397 1.20992 0.95899 0.95569 0.98662 1.18765 0.93731 0.90829 0.94414 0.98215 1.21361 1.46519 0.93787 0.93431 0.94118 1.25561 0.95468 0.95201 1.01791 1.69921 1.49506 0.99454 1.36392 0.85787 0.78368 0.77346 0.81582 1.20197 1.20634 1.20107 1.21500 0.95286 1.00453 0.97087 1.21205 0.98020 0.93689 0.98998 1.21970 0.90735 0.88978 0.97709 0.92276 0.94167 0.88120 0.91360 0.75414 0.93995 0.93186 0.92973 0.95265 0.90274 0.91879 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.43 11.17 127.77 1.43 3.86 16 2 N -0.67 -19.45 3.43 -708.62 -2.43 -21.88 16 3 C 0.34 9.74 12.22 179.05 2.19 11.93 16 4 N -0.60 -23.02 11.75 -329.87 -3.88 -26.90 16 5 C 0.05 2.34 3.11 45.36 0.14 2.49 16 6 H 0.05 2.42 5.98 -2.39 -0.01 2.41 16 7 C -0.07 -3.34 5.49 30.20 0.17 -3.17 16 8 C 0.04 2.14 2.53 -11.36 -0.03 2.11 16 9 H 0.00 -0.02 8.14 -2.38 -0.02 -0.03 16 10 C -0.51 -28.62 6.91 25.60 0.18 -28.44 16 11 H 0.04 2.34 6.92 -2.91 -0.02 2.32 16 12 C 0.02 1.00 5.27 84.65 0.45 1.45 16 13 N -0.91 -52.02 11.07 21.45 0.24 -51.78 16 14 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C -0.10 -4.94 5.07 30.81 0.16 -4.78 16 19 C -0.08 -3.30 5.52 30.47 0.17 -3.13 16 20 C 0.11 4.17 3.01 45.52 0.14 4.30 16 21 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 22 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.23 3.85 8.06 -2.91 -0.02 3.83 16 26 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 27 H 0.05 2.11 8.00 -2.39 -0.02 2.10 16 28 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.08 4.21 5.60 -2.39 -0.01 4.20 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.04 2.06 7.40 -2.39 -0.02 2.04 16 Total: -1.00 -64.70 252.60 2.02 -62.68 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.09 Total: 4.90 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.98 Total: -13.40 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -6.07 Total: -100.56 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.70 2.02 -62.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.204 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds