Wall clock time and date at job start Thu Apr 9 2020 14:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 C 1.52996 * 109.47377 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46922 * 299.99984 * 4 3 2 6 6 C 1.50697 * 109.47187 * 299.99730 * 5 4 3 7 7 H 1.08001 * 119.99962 * 122.77846 * 6 5 4 8 8 C 1.37878 * 119.99986 * 302.78218 * 6 5 4 9 9 N 1.31512 * 120.00157 * 191.85104 * 8 6 5 10 10 Si 1.86795 * 120.00087 * 11.85528 * 8 6 5 11 11 H 1.48500 * 109.47526 * 84.29182 * 10 8 6 12 12 H 1.48498 * 109.47337 * 204.29560 * 10 8 6 13 13 H 1.48499 * 109.47008 * 324.29174 * 10 8 6 14 14 C 1.53002 * 109.47179 * 179.97438 * 5 4 3 15 15 C 1.52997 * 117.49939 * 243.31827 * 14 5 4 16 16 C 1.53002 * 117.49967 * 174.69446 * 14 5 4 17 17 C 1.52998 * 109.47384 * 60.00030 * 5 4 3 18 18 C 1.53001 * 109.47179 * 120.00007 * 2 1 3 19 19 H 1.09000 * 109.47434 * 63.92527 * 1 2 3 20 20 H 1.09004 * 109.47188 * 183.92433 * 1 2 3 21 21 H 1.09005 * 109.47270 * 303.92023 * 1 2 3 22 22 H 1.08994 * 109.46854 * 239.99920 * 2 1 3 23 23 H 1.09005 * 109.47458 * 59.99744 * 3 2 1 24 24 H 1.09000 * 109.47109 * 300.00158 * 3 2 1 25 25 H 1.09004 * 109.46833 * 59.99805 * 4 3 2 26 26 H 1.09001 * 109.47381 * 180.02562 * 4 3 2 27 27 H 0.97001 * 120.00331 * 179.97438 * 9 8 6 28 28 H 1.09003 * 115.54760 * 29.02054 * 14 5 4 29 29 H 1.09008 * 117.49997 * 359.97438 * 15 14 5 30 30 H 1.08999 * 117.50032 * 145.01985 * 15 14 5 31 31 H 1.08997 * 117.49590 * 214.97507 * 16 14 5 32 32 H 1.08995 * 117.49934 * 359.97438 * 16 14 5 33 33 H 1.09004 * 109.47307 * 59.99606 * 17 5 4 34 34 H 1.09000 * 109.47412 * 179.97438 * 17 5 4 35 35 H 1.09001 * 109.47058 * 59.99956 * 18 2 1 36 36 H 1.09004 * 109.47333 * 300.00239 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7211 1.2483 6 6 3.5787 1.4313 2.4790 7 1 2.9956 0.8942 3.2125 8 6 3.8639 2.7669 2.6687 9 7 3.6344 3.3291 3.8352 10 14 4.5762 3.7778 1.2688 11 1 3.4748 4.2673 0.4012 12 1 5.3212 4.9363 1.8238 13 1 5.4989 2.9336 0.4682 14 6 5.6105 0.7205 1.2474 15 6 6.3164 -0.6345 1.1684 16 6 6.3175 0.1533 2.4800 17 6 3.5706 -0.7214 1.2483 18 6 2.0400 -0.7213 1.2492 19 1 -0.3634 0.4517 -0.9230 20 1 -0.3634 -1.0253 0.0703 21 1 -0.3634 0.5735 0.8528 22 1 1.8933 -0.5138 -0.8899 23 1 1.6767 1.9564 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 3.9329 0.9288 -0.8909 26 1 3.9333 2.4702 -0.0002 27 1 3.8354 4.2686 3.9688 28 1 6.0806 1.5635 0.7409 29 1 5.6908 -1.5258 1.1175 30 1 7.2512 -0.6833 0.6098 31 1 7.2529 0.6229 2.7842 32 1 5.6927 -0.2191 3.2917 33 1 3.9335 -1.2352 0.3581 34 1 3.9346 -1.2355 2.1379 35 1 1.6767 -1.7489 1.2492 36 1 1.6767 -0.2075 2.1393 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:30 Heat of formation + Delta-G solvation = 18.268146 kcal Electronic energy + Delta-G solvation = -14938.400939 eV Core-core repulsion = 12809.043481 eV Total energy + Delta-G solvation = -2129.357459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.03612 -35.76791 -32.62362 -31.02072 -29.98298 -26.55039 -24.13604 -22.37255 -21.38190 -21.24265 -19.22772 -18.47211 -15.71974 -15.19865 -15.11984 -13.89805 -13.80223 -13.47293 -12.83234 -12.68205 -12.38040 -12.13297 -11.60598 -11.29811 -10.93211 -10.73504 -10.72807 -10.49226 -10.21340 -10.07867 -9.83638 -9.80429 -9.46715 -9.37494 -8.92622 -8.48754 -8.32160 -8.24443 -6.01060 -3.94347 3.31590 3.39380 3.47151 4.49031 4.85055 5.30642 5.43714 5.46241 5.60114 5.73329 5.92550 5.99661 6.05981 6.14104 6.21766 6.29091 6.32993 6.34713 6.41948 6.49682 6.51999 6.59551 6.69150 6.75079 6.79169 6.85226 6.94839 7.08791 7.15611 7.23573 7.33544 7.41708 7.57905 7.91945 8.62523 9.03949 9.66498 11.12405 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.017400 C = 0.013215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.728503 B = 1608.777366 C = 2118.265274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.103 4.103 4 C -0.113 4.113 5 C 0.072 3.928 6 C -0.488 4.488 7 H 0.074 0.926 8 C 0.077 3.923 9 N -0.900 5.900 10 Si 0.874 3.126 11 H -0.286 1.286 12 H -0.310 1.310 13 H -0.248 1.248 14 C -0.136 4.136 15 C -0.211 4.211 16 C -0.160 4.160 17 C -0.091 4.091 18 C -0.106 4.106 19 H 0.044 0.956 20 H 0.045 0.955 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.261 0.739 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -5.957 -7.102 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.141 4.141 4 C -0.150 4.150 5 C 0.071 3.929 6 C -0.525 4.525 7 H 0.092 0.908 8 C -0.124 4.124 9 N -0.538 5.538 10 Si 0.708 3.292 11 H -0.214 1.214 12 H -0.239 1.239 13 H -0.175 1.175 14 C -0.154 4.154 15 C -0.248 4.248 16 C -0.197 4.197 17 C -0.128 4.128 18 C -0.143 4.143 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.098 0.902 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.659 -5.797 -6.979 9.096 hybrid contribution 0.470 0.834 -0.714 1.194 sum -0.189 -4.963 -7.693 9.157 Atomic orbital electron populations 1.21831 0.96506 1.00678 1.01178 1.21022 0.94158 0.96958 0.98042 1.21469 0.95942 0.95535 1.01129 1.21907 0.95580 0.99156 0.98345 1.18059 0.88239 0.92604 0.94006 1.20774 1.33264 0.94496 1.04012 0.90848 1.24909 0.94694 0.97998 0.94791 1.69940 1.49337 1.12467 1.22019 0.87418 0.79682 0.79133 0.82932 1.21357 1.23915 1.17505 1.23100 0.97339 0.94350 1.00623 1.23126 1.01804 0.97217 1.02621 1.22621 1.01194 1.03885 0.91988 1.21481 0.94638 0.97589 0.99112 1.21532 0.96434 0.97803 0.98534 0.93638 0.93551 0.92612 0.92779 0.90206 0.94486 0.94376 0.93953 0.92958 0.88668 0.89108 0.91031 0.90887 0.88632 0.94288 0.92996 0.94330 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 2 C -0.08 -1.45 2.72 -90.62 -0.25 -1.69 16 3 C -0.10 -2.06 4.98 -26.74 -0.13 -2.19 16 4 C -0.11 -2.41 3.97 -26.73 -0.11 -2.52 16 5 C 0.07 1.59 0.36 -155.66 -0.06 1.53 16 6 C -0.49 -12.76 6.02 -34.44 -0.21 -12.96 16 7 H 0.07 2.11 7.06 -52.49 -0.37 1.74 16 8 C 0.08 2.15 5.38 -17.82 -0.10 2.05 16 9 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 10 Si 0.87 21.72 23.44 -169.99 -3.99 17.74 16 11 H -0.29 -7.06 7.07 56.52 0.40 -6.66 16 12 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 13 H -0.25 -5.73 3.95 56.52 0.22 -5.51 16 14 C -0.14 -2.91 4.10 -90.62 -0.37 -3.29 16 15 C -0.21 -3.84 9.50 -26.73 -0.25 -4.09 16 16 C -0.16 -3.25 9.48 -26.73 -0.25 -3.51 16 17 C -0.09 -1.77 3.26 -26.71 -0.09 -1.86 16 18 C -0.11 -1.94 4.98 -26.70 -0.13 -2.08 16 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 1.80 7.22 -51.93 -0.37 1.42 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.97 2.20 -51.93 -0.11 0.86 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.10 2.12 5.16 -51.93 -0.27 1.86 16 29 H 0.09 1.57 5.82 -51.92 -0.30 1.27 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.10 2.06 7.81 -51.93 -0.41 1.65 16 33 H 0.04 0.70 7.25 -51.93 -0.38 0.33 16 34 H 0.05 1.03 7.18 -51.93 -0.37 0.66 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.55 6.68 -51.93 -0.35 1.20 16 LS Contribution 257.42 15.07 3.88 3.88 Total: -1.00 -27.84 257.42 -6.99 -34.82 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.05 Total: 2.21 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: -1.60 Total: -32.44 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.77 Total: -26.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -3.99 Total: 17.74 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.84 -6.99 -34.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.092 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds