Wall clock time and date at job start Thu Apr 9 2020 14:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47178 * 2 1 4 4 N 1.46500 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.34946 * 126.03375 * 125.00298 * 4 3 2 6 6 C 1.35319 * 107.74069 * 180.02562 * 5 4 3 7 7 C 1.50701 * 126.03809 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46995 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47433 * 240.00634 * 7 6 5 10 10 C 1.50694 * 109.47169 * 120.00241 * 7 6 5 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 7 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.39864 * 107.92049 * 0.26524 * 6 5 4 19 19 N 1.30831 * 108.20560 * 359.55108 * 18 6 5 20 20 H 1.09000 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47008 * 299.99949 * 1 2 3 22 22 H 1.08998 * 109.47183 * 59.99881 * 1 2 3 23 23 H 1.08999 * 109.47008 * 240.00051 * 2 1 3 24 24 H 1.08998 * 109.47183 * 120.00119 * 2 1 3 25 25 H 1.09007 * 109.46530 * 59.99884 * 3 2 1 26 26 H 1.08998 * 109.47160 * 300.00133 * 3 2 1 27 27 H 1.07997 * 126.12635 * 0.04375 * 5 4 3 28 28 H 1.09001 * 109.47411 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.46412 * 300.00110 * 9 7 6 30 30 H 1.08993 * 109.47298 * 59.99347 * 9 7 6 31 31 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 32 32 H 1.08001 * 125.89655 * 179.73542 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2993 2.0683 -0.8930 6 6 5.5839 1.8243 -0.5449 7 6 6.8085 2.3276 -1.2647 8 1 6.5048 2.9283 -2.1220 9 6 7.6430 1.1383 -1.7446 10 6 7.6311 3.1723 -0.3262 11 1 7.3000 3.3294 0.6897 12 6 8.8059 3.7456 -0.7648 13 7 9.2088 3.5547 -2.0020 14 14 9.8252 4.7933 0.3983 15 1 9.3883 6.2092 0.3008 16 1 9.6378 4.3122 1.7907 17 1 11.2597 4.6912 0.0281 18 6 5.5744 1.0168 0.5971 19 7 4.3288 0.7924 0.9286 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9563 0.8901 26 1 1.6767 1.9564 -0.8900 27 1 3.9688 2.6585 -1.7350 28 1 8.5289 1.5024 -2.2648 29 1 7.9466 0.5380 -0.8869 30 1 7.0480 0.5273 -2.4233 31 1 10.0351 3.9583 -2.3107 32 1 6.4449 0.6455 1.1174 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261210335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:42 Heat of formation + Delta-G solvation = 58.267579 kcal Electronic energy + Delta-G solvation = -13327.252596 eV Core-core repulsion = 11096.089299 eV Total energy + Delta-G solvation = -2231.163297 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39733 -35.40061 -34.00895 -31.28130 -30.60265 -28.09732 -25.60053 -24.97411 -22.03192 -21.46773 -20.02431 -18.83193 -16.48508 -15.77818 -15.30056 -14.49290 -14.28415 -13.80074 -13.10720 -12.81362 -12.68641 -12.18980 -11.93491 -11.89226 -11.38933 -11.26540 -10.91128 -10.83644 -10.75219 -10.26910 -10.23315 -9.85408 -9.33668 -8.87140 -8.63489 -8.26409 -7.32587 -5.90848 -3.96078 2.63976 3.14121 3.35756 3.42266 3.46297 3.81140 4.52076 4.69338 4.86774 5.09727 5.27068 5.39480 5.42828 5.57287 5.63787 5.80158 5.85682 6.04438 6.17386 6.52424 6.65247 6.86821 7.02756 7.20597 7.38978 7.56742 7.77086 7.85294 8.04749 8.22548 8.48115 8.58819 9.07016 9.68034 11.14714 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.062269 B = 0.006687 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.553727 B = 4186.095186 C = 4328.751095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.142 3.858 4 N -0.390 5.390 5 C 0.016 3.984 6 C -0.172 4.172 7 C 0.106 3.894 8 H 0.029 0.971 9 C -0.129 4.129 10 C -0.500 4.500 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.282 1.282 16 H -0.275 1.275 17 H -0.287 1.287 18 C 0.055 3.945 19 N -0.317 5.317 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.082 0.918 29 H 0.026 0.974 30 H 0.005 0.995 31 H 0.259 0.741 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.708 -4.405 1.510 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.175 5.175 5 C -0.126 4.126 6 C -0.183 4.183 7 C 0.086 3.914 8 H 0.047 0.953 9 C -0.187 4.187 10 C -0.538 4.538 11 H 0.073 0.927 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.718 3.282 15 H -0.209 1.209 16 H -0.200 1.200 17 H -0.213 1.213 18 C -0.130 4.130 19 N -0.139 5.139 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.179 0.821 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.494 -4.914 2.204 14.529 hybrid contribution 1.144 1.102 0.001 1.588 sum -12.350 -3.812 2.205 13.112 Atomic orbital electron populations 1.21714 0.95044 1.02054 1.01874 1.21801 0.95715 0.96280 1.03598 1.21523 0.75719 0.97988 1.02793 1.48357 1.05252 1.41527 1.22338 1.22257 0.91309 1.01842 0.97217 1.20896 0.95261 1.03091 0.99037 1.17211 0.87199 0.92920 0.94047 0.95316 1.21738 1.01528 0.96879 0.98521 1.21164 1.05627 1.29260 0.97775 0.92724 1.24954 0.97549 0.96510 0.95078 1.69892 1.23024 1.44741 1.15603 0.86627 0.79430 0.80745 0.81394 1.20878 1.19958 1.21335 1.23708 0.94149 0.98348 0.96812 1.77100 1.02004 1.20544 1.14230 0.92311 0.92498 0.92602 0.91589 0.90604 0.90829 0.89464 0.82123 0.89940 0.95532 0.97585 0.93145 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.14 -1.55 6.12 -26.73 -0.16 -1.72 16 3 C 0.14 1.81 6.51 -4.04 -0.03 1.79 16 4 N -0.39 -6.97 3.68 -61.36 -0.23 -7.19 16 5 C 0.02 0.32 11.34 -17.22 -0.20 0.12 16 6 C -0.17 -3.85 4.74 -105.05 -0.50 -4.35 16 7 C 0.11 2.68 2.66 -92.93 -0.25 2.43 16 8 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 9 C -0.13 -3.16 8.86 37.16 0.33 -2.83 16 10 C -0.50 -13.80 8.42 -34.44 -0.29 -14.09 16 11 H 0.05 1.53 7.73 -52.49 -0.41 1.12 16 12 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 13 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 14 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.06 1.18 11.52 -17.37 -0.20 0.98 16 19 N -0.32 -6.39 12.42 30.62 0.38 -6.01 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 29 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 30 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.18 3.51 8.06 -52.49 -0.42 3.09 16 LS Contribution 273.08 15.07 4.12 4.12 Total: -1.00 -30.25 273.08 -6.06 -36.31 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.92 Total: -1.80 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.02 Total: -16.99 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.78 Total: -38.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.25 -6.06 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.580 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds