Wall clock time and date at job start Thu Apr 9 2020 14:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.41743 * 127.75164 * 2 1 4 4 C 1.29486 * 112.68516 * 155.34378 * 3 2 1 5 5 C 1.48881 * 107.61155 * 0.61681 * 4 3 2 6 6 H 1.09002 * 109.23745 * 266.83710 * 5 4 3 7 7 C 1.50805 * 120.63247 * 139.78869 * 5 4 3 8 8 C 1.54031 * 106.73937 * 179.80485 * 7 5 4 9 9 H 1.09003 * 108.96216 * 176.63346 * 8 7 5 10 10 C 1.50699 * 108.95604 * 295.38565 * 8 7 5 11 11 H 1.07998 * 120.00653 * 5.49000 * 10 8 7 12 12 C 1.37885 * 119.99449 * 185.49291 * 10 8 7 13 13 N 1.31507 * 120.00426 * 9.74604 * 12 10 8 14 14 Si 1.86809 * 119.99561 * 189.75284 * 12 10 8 15 15 H 1.48496 * 109.47335 * 94.99205 * 14 12 10 16 16 H 1.48507 * 109.46773 * 214.99130 * 14 12 10 17 17 H 1.48497 * 109.47059 * 334.98950 * 14 12 10 18 18 C 1.52478 * 112.07017 * 56.04755 * 8 7 5 19 19 C 1.54187 * 111.90581 * 306.85066 * 18 8 7 20 20 C 1.45499 * 127.75859 * 180.32823 * 2 1 3 21 21 H 1.09000 * 110.01050 * 99.97871 * 20 2 1 22 22 H 1.09000 * 109.47302 * 269.67980 * 1 2 3 23 23 H 1.09002 * 109.47187 * 149.67755 * 1 2 3 24 24 H 1.09003 * 109.47233 * 29.67372 * 1 2 3 25 25 H 1.07993 * 126.17782 * 180.38666 * 4 3 2 26 26 H 1.08999 * 110.00149 * 299.10852 * 7 5 4 27 27 H 1.09000 * 109.99740 * 60.49682 * 7 5 4 28 28 H 0.96996 * 120.00325 * 180.02562 * 13 12 10 29 29 H 1.09000 * 108.98977 * 67.47376 * 18 8 7 30 30 H 1.08991 * 108.99588 * 186.22008 * 18 8 7 31 31 H 1.09005 * 110.09675 * 298.54244 * 19 18 8 32 32 H 1.08997 * 110.09485 * 176.88898 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3328 1.1207 0.0000 4 6 3.4970 0.8508 0.4984 5 6 3.4988 -0.5866 0.8862 6 1 3.2106 -0.6764 1.9336 7 6 4.7130 -1.4469 0.6418 8 6 4.3707 -2.8555 1.1625 9 1 5.2045 -3.5244 0.9489 10 6 4.1660 -2.7897 2.6540 11 1 4.1808 -1.8355 3.1597 12 6 3.9597 -3.9479 3.3733 13 7 4.1306 -5.1183 2.7984 14 14 3.4372 -3.8545 5.1644 15 1 1.9584 -3.9553 5.2546 16 1 4.0567 -4.9731 5.9197 17 1 3.8814 -2.5608 5.7427 18 6 3.1097 -3.4155 0.5135 19 6 1.9178 -2.4457 0.6412 20 6 2.3559 -1.1503 -0.0066 21 1 2.7246 -1.3307 -1.0163 22 1 -0.3634 -0.0057 1.0276 23 1 -0.3634 -0.8871 -0.5188 24 1 -0.3634 0.8929 -0.5088 25 1 4.3190 1.5424 0.6089 26 1 4.9328 -1.4871 -0.4251 27 1 5.5690 -1.0465 1.1850 28 1 3.9851 -5.9330 3.3042 29 1 3.3060 -3.5993 -0.5428 30 1 2.8523 -4.3592 0.9943 31 1 1.6822 -2.2780 1.6922 32 1 1.0491 -2.8494 0.1211 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:46 Heat of formation + Delta-G solvation = 59.949669 kcal Electronic energy + Delta-G solvation = -14269.924140 eV Core-core repulsion = 12038.833784 eV Total energy + Delta-G solvation = -2231.090356 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88023 -35.76123 -32.40050 -32.17545 -29.39636 -28.41577 -25.70839 -24.53087 -21.82455 -20.57441 -19.33537 -19.02972 -15.96948 -15.49367 -15.24976 -14.50945 -13.86018 -13.60619 -13.21102 -12.78392 -12.42309 -12.30989 -11.78622 -11.51075 -11.14901 -11.07514 -10.80274 -10.73865 -10.51785 -10.15687 -9.89477 -9.42440 -9.19988 -8.97771 -8.73313 -8.29250 -7.11122 -6.03510 -4.03896 2.66642 3.28467 3.33401 3.36678 3.39428 4.42866 5.10689 5.25169 5.31352 5.37028 5.67236 5.82730 5.87070 5.95121 6.10390 6.22513 6.35068 6.42762 6.49783 6.61481 6.72053 6.86346 7.04192 7.13290 7.25749 7.41876 7.70654 7.84477 7.97424 8.02397 8.42708 8.44716 8.98578 9.58797 11.05193 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.037636 B = 0.010783 C = 0.010477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.790205 B = 2596.085257 C = 2671.815207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.577 5.577 3 N -0.253 5.253 4 C 0.040 3.960 5 C -0.110 4.110 6 H 0.103 0.897 7 C -0.086 4.086 8 C 0.040 3.960 9 H 0.035 0.965 10 C -0.508 4.508 11 H 0.056 0.944 12 C 0.064 3.936 13 N -0.888 5.888 14 Si 0.881 3.119 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.097 4.097 19 C -0.097 4.097 20 C 0.127 3.873 21 H 0.051 0.949 22 H 0.034 0.966 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.181 0.819 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.259 0.741 29 H 0.019 0.981 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 6.539 -4.139 8.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.396 5.396 3 N -0.054 5.054 4 C -0.175 4.175 5 C -0.131 4.131 6 H 0.120 0.880 7 C -0.125 4.125 8 C 0.022 3.978 9 H 0.054 0.946 10 C -0.546 4.546 11 H 0.074 0.926 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.709 3.291 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.136 4.136 19 C -0.136 4.136 20 C 0.021 3.979 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.198 0.802 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.273 7.026 -4.557 9.401 hybrid contribution 0.068 -0.764 1.362 1.563 sum -4.204 6.262 -3.195 8.192 Atomic orbital electron populations 1.20914 0.76358 1.01283 0.99836 1.50605 1.02369 1.00591 1.86001 1.75644 1.02705 1.15026 1.12046 1.26715 0.96988 0.98249 0.95530 1.21607 0.98250 0.90781 1.02494 0.87979 1.21214 0.95245 0.97527 0.98473 1.18802 0.93830 0.90147 0.95035 0.94642 1.21183 1.48732 0.92596 0.92105 0.92607 1.24926 0.95540 0.95568 0.97723 1.69943 1.48733 0.97213 1.36831 0.86751 0.78853 0.77714 0.85771 1.20828 1.21362 1.19910 1.21521 0.95371 0.99620 0.97081 1.21446 0.98313 0.93385 1.00470 1.21913 0.89682 0.88943 0.97327 0.93103 0.94763 0.91936 0.92338 0.80173 0.94283 0.92369 0.93073 0.96205 0.89957 0.90913 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 2.34 11.45 59.85 0.69 3.03 16 2 N -0.58 -10.61 4.23 -114.73 -0.49 -11.09 16 3 N -0.25 -4.64 12.24 32.46 0.40 -4.25 16 4 C 0.04 0.68 12.04 -14.13 -0.17 0.51 16 5 C -0.11 -2.11 2.31 -92.36 -0.21 -2.32 16 6 H 0.10 2.22 5.86 -51.93 -0.30 1.92 16 7 C -0.09 -1.70 5.32 -27.29 -0.15 -1.85 16 8 C 0.04 0.95 2.37 -91.50 -0.22 0.73 16 9 H 0.04 0.93 8.10 -51.93 -0.42 0.51 16 10 C -0.51 -13.12 6.96 -34.44 -0.24 -13.36 16 11 H 0.06 1.44 6.73 -52.49 -0.35 1.09 16 12 C 0.06 1.70 5.10 -17.82 -0.09 1.61 16 13 N -0.89 -24.74 11.94 55.43 0.66 -24.08 16 14 Si 0.88 20.84 29.55 -169.99 -5.02 15.82 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 C -0.10 -2.18 5.12 -26.38 -0.14 -2.32 16 19 C -0.10 -1.97 5.54 -26.96 -0.15 -2.12 16 20 C 0.13 2.44 3.07 -67.94 -0.21 2.23 16 21 H 0.05 1.02 7.90 -51.93 -0.41 0.61 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.04 0.72 7.98 -51.93 -0.41 0.31 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 2.08 6.45 -51.93 -0.34 1.74 16 31 H 0.07 1.61 7.42 -51.93 -0.39 1.22 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 254.22 15.07 3.83 3.83 Total: -1.00 -28.38 254.22 -6.22 -34.60 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.72 Total: -0.98 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.88 Total: -13.86 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.57 Total: -39.42 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.38 -6.22 -34.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.549 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds