Wall clock time and date at job start Thu Apr 9 2020 14:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.41743 * 127.75164 * 2 1 4 4 C 1.29486 * 112.68516 * 155.34378 * 3 2 1 5 5 C 1.48881 * 107.61155 * 0.61681 * 4 3 2 6 6 H 1.09002 * 109.23745 * 266.83710 * 5 4 3 7 7 C 1.50805 * 120.63247 * 139.78869 * 5 4 3 8 8 C 1.54031 * 106.73937 * 179.80485 * 7 5 4 9 9 H 1.09003 * 108.96216 * 176.63346 * 8 7 5 10 10 C 1.50699 * 108.95604 * 295.38565 * 8 7 5 11 11 H 1.07998 * 120.00653 * 5.49000 * 10 8 7 12 12 C 1.37885 * 119.99449 * 185.49291 * 10 8 7 13 13 N 1.31507 * 120.00426 * 9.74604 * 12 10 8 14 14 Si 1.86809 * 119.99561 * 189.75284 * 12 10 8 15 15 H 1.48496 * 109.47335 * 94.99205 * 14 12 10 16 16 H 1.48507 * 109.46773 * 214.99130 * 14 12 10 17 17 H 1.48497 * 109.47059 * 334.98950 * 14 12 10 18 18 C 1.52478 * 112.07017 * 56.04755 * 8 7 5 19 19 C 1.54187 * 111.90581 * 306.85066 * 18 8 7 20 20 C 1.45499 * 127.75859 * 180.32823 * 2 1 3 21 21 H 1.09000 * 110.01050 * 99.97871 * 20 2 1 22 22 H 1.09000 * 109.47302 * 269.67980 * 1 2 3 23 23 H 1.09002 * 109.47187 * 149.67755 * 1 2 3 24 24 H 1.09003 * 109.47233 * 29.67372 * 1 2 3 25 25 H 1.07993 * 126.17782 * 180.38666 * 4 3 2 26 26 H 1.08999 * 110.00149 * 299.10852 * 7 5 4 27 27 H 1.09000 * 109.99740 * 60.49682 * 7 5 4 28 28 H 0.96996 * 120.00325 * 180.02562 * 13 12 10 29 29 H 1.09000 * 108.98977 * 67.47376 * 18 8 7 30 30 H 1.08991 * 108.99588 * 186.22008 * 18 8 7 31 31 H 1.09005 * 110.09675 * 298.54244 * 19 18 8 32 32 H 1.08997 * 110.09485 * 176.88898 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3328 1.1207 0.0000 4 6 3.4970 0.8508 0.4984 5 6 3.4988 -0.5866 0.8862 6 1 3.2106 -0.6764 1.9336 7 6 4.7130 -1.4469 0.6418 8 6 4.3707 -2.8555 1.1625 9 1 5.2045 -3.5244 0.9489 10 6 4.1660 -2.7897 2.6540 11 1 4.1808 -1.8355 3.1597 12 6 3.9597 -3.9479 3.3733 13 7 4.1306 -5.1183 2.7984 14 14 3.4372 -3.8545 5.1644 15 1 1.9584 -3.9553 5.2546 16 1 4.0567 -4.9731 5.9197 17 1 3.8814 -2.5608 5.7427 18 6 3.1097 -3.4155 0.5135 19 6 1.9178 -2.4457 0.6412 20 6 2.3559 -1.1503 -0.0066 21 1 2.7246 -1.3307 -1.0163 22 1 -0.3634 -0.0057 1.0276 23 1 -0.3634 -0.8871 -0.5188 24 1 -0.3634 0.8929 -0.5088 25 1 4.3190 1.5424 0.6089 26 1 4.9328 -1.4871 -0.4251 27 1 5.5690 -1.0465 1.1850 28 1 3.9851 -5.9330 3.3042 29 1 3.3060 -3.5993 -0.5428 30 1 2.8523 -4.3592 0.9943 31 1 1.6822 -2.2780 1.6922 32 1 1.0491 -2.8494 0.1211 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:46 Heat of formation + Delta-G solvation = 43.136865 kcal Electronic energy + Delta-G solvation = -14270.653198 eV Core-core repulsion = 12038.833784 eV Total energy + Delta-G solvation = -2231.819414 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39486 -37.43964 -34.14665 -33.76499 -30.97770 -30.10809 -27.20521 -26.33896 -23.45109 -22.17560 -20.83616 -20.68966 -17.92398 -17.01574 -16.73005 -16.37061 -15.32962 -15.28861 -14.62239 -14.48985 -14.04964 -13.74182 -13.35480 -13.14497 -12.89636 -12.67691 -12.53153 -12.46474 -12.30758 -11.93748 -11.58186 -11.10219 -10.91026 -10.61572 -10.59378 -10.31636 -8.50099 -8.08770 -6.13481 1.32559 1.39063 1.42728 1.50269 2.01788 2.45008 3.22778 3.63988 3.88382 3.96080 4.20295 4.42777 4.55885 4.59845 4.70162 4.73431 4.82247 4.82848 4.85820 4.95413 5.09788 5.23105 5.41630 5.46778 5.59874 5.67301 5.79932 5.92461 6.11848 6.42473 6.61410 6.96688 7.09597 7.51522 8.99641 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.037636 B = 0.010783 C = 0.010477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.790205 B = 2596.085257 C = 2671.815207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.152 3.848 2 N -0.588 5.588 3 N -0.269 5.269 4 C 0.055 3.945 5 C -0.105 4.105 6 H 0.076 0.924 7 C -0.076 4.076 8 C 0.036 3.964 9 H 0.002 0.998 10 C -0.510 4.510 11 H 0.053 0.947 12 C 0.017 3.983 13 N -0.918 5.918 14 Si 0.936 3.064 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.269 1.269 18 C -0.092 4.092 19 C -0.085 4.085 20 C 0.131 3.869 21 H 0.049 0.951 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.258 0.742 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 8.122 -4.422 9.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.407 5.407 3 N -0.070 5.070 4 C -0.160 4.160 5 C -0.127 4.127 6 H 0.093 0.907 7 C -0.114 4.114 8 C 0.018 3.982 9 H 0.020 0.980 10 C -0.548 4.548 11 H 0.072 0.928 12 C -0.181 4.181 13 N -0.558 5.558 14 Si 0.763 3.237 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.131 4.131 19 C -0.124 4.124 20 C 0.024 3.976 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.238 0.762 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.681 8.627 -4.839 10.943 hybrid contribution 0.210 -1.266 1.436 1.926 sum -4.471 7.361 -3.402 9.261 Atomic orbital electron populations 1.21144 0.74620 1.02828 1.00376 1.50832 1.03431 1.00036 1.86386 1.75648 1.03199 1.15130 1.13006 1.27202 0.97513 0.97191 0.94090 1.21494 0.97677 0.92573 1.00920 0.90651 1.21053 0.95864 0.95194 0.99330 1.18799 0.93154 0.91959 0.94334 0.97998 1.21450 1.47653 0.92278 0.93399 0.92837 1.25575 0.95929 0.95458 1.01167 1.70057 1.50003 0.97661 1.38106 0.85882 0.78334 0.77695 0.81831 1.20707 1.21389 1.19310 1.21365 0.95830 0.98690 0.97179 1.21245 0.97913 0.93779 0.99462 1.21714 0.90193 0.88764 0.96883 0.93300 0.94681 0.90525 0.90714 0.76235 0.92649 0.91680 0.93272 0.95016 0.93186 0.93127 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 4.12 11.45 127.77 1.46 5.59 16 2 N -0.59 -20.26 4.23 -516.90 -2.19 -22.45 16 3 N -0.27 -9.11 12.24 -51.22 -0.63 -9.74 16 4 C 0.05 1.67 12.04 87.89 1.06 2.73 16 5 C -0.11 -3.85 2.31 -11.92 -0.03 -3.87 16 6 H 0.08 3.21 5.86 -2.39 -0.01 3.19 16 7 C -0.08 -2.89 5.32 30.23 0.16 -2.73 16 8 C 0.04 1.71 2.37 -11.36 -0.03 1.68 16 9 H 0.00 0.10 8.10 -2.39 -0.02 0.08 16 10 C -0.51 -26.50 6.96 25.60 0.18 -26.32 16 11 H 0.05 2.76 6.73 -2.91 -0.02 2.74 16 12 C 0.02 0.92 5.10 84.66 0.43 1.35 16 13 N -0.92 -52.20 11.94 21.45 0.26 -51.94 16 14 Si 0.94 43.00 29.55 68.60 2.03 45.03 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 C -0.09 -4.14 5.12 30.82 0.16 -3.98 16 19 C -0.08 -3.38 5.54 30.44 0.17 -3.21 16 20 C 0.13 4.79 3.07 45.52 0.14 4.93 16 21 H 0.05 1.84 7.90 -2.39 -0.02 1.82 16 22 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.22 4.72 8.06 -2.91 -0.02 4.69 16 26 H 0.05 1.94 7.98 -2.39 -0.02 1.92 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 2.58 6.45 -2.39 -0.02 2.56 16 31 H 0.05 2.23 7.42 -2.38 -0.02 2.21 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -60.21 254.22 4.26 -55.95 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.09 Total: 6.99 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 3.70 Total: -23.83 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.56 Total: -84.13 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -60.21 4.26 -55.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.084 kcal (2) G-P(sol) polarization free energy of solvation -60.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds