Wall clock time and date at job start Thu Apr 9 2020 14:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.41749 * 127.77290 * 2 1 4 4 C 1.29505 * 112.66864 * 155.30324 * 3 2 1 5 5 C 1.48943 * 107.64859 * 0.65699 * 4 3 2 6 6 H 1.09005 * 108.88001 * 266.54936 * 5 4 3 7 7 C 1.51111 * 120.28644 * 139.02066 * 5 4 3 8 8 C 1.54219 * 106.21122 * 179.31287 * 7 5 4 9 9 H 1.09001 * 109.01010 * 296.61933 * 8 7 5 10 10 C 1.50698 * 109.00676 * 177.83534 * 8 7 5 11 11 H 1.07996 * 119.99903 * 357.67077 * 10 8 7 12 12 C 1.37873 * 120.00205 * 177.65950 * 10 8 7 13 13 N 1.31515 * 120.00166 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99992 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46976 * 60.00877 * 14 12 10 16 16 H 1.48509 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47225 * 300.00249 * 14 12 10 18 18 C 1.52485 * 111.84557 * 57.23017 * 8 7 5 19 19 C 1.53990 * 112.13392 * 306.84821 * 18 8 7 20 20 C 1.45433 * 127.77110 * 180.32578 * 2 1 3 21 21 H 1.08994 * 109.87794 * 99.73194 * 20 2 1 22 22 H 1.09001 * 109.47060 * 269.68207 * 1 2 3 23 23 H 1.09004 * 109.47073 * 29.67696 * 1 2 3 24 24 H 1.09000 * 109.47212 * 149.67779 * 1 2 3 25 25 H 1.07994 * 126.14998 * 180.35767 * 4 3 2 26 26 H 1.08997 * 110.09610 * 60.13502 * 7 5 4 27 27 H 1.09002 * 110.09385 * 298.48890 * 7 5 4 28 28 H 0.96996 * 120.00492 * 180.02562 * 13 12 10 29 29 H 1.08998 * 108.94815 * 186.16273 * 18 8 7 30 30 H 1.08999 * 108.87767 * 67.48678 * 18 8 7 31 31 H 1.08996 * 110.00016 * 297.23323 * 19 18 8 32 32 H 1.09000 * 110.07421 * 175.88532 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3333 1.1204 0.0000 4 6 3.4972 0.8499 0.4993 5 6 3.4991 -0.5881 0.8871 6 1 3.2146 -0.6709 1.9362 7 6 4.7141 -1.4470 0.6236 8 6 4.3736 -2.8515 1.1618 9 1 4.2216 -2.7915 2.2395 10 6 5.5288 -3.7778 0.8819 11 1 6.3924 -3.4165 0.3433 12 6 5.4835 -5.0864 1.3135 13 7 4.4318 -5.5265 1.9691 14 14 6.9159 -6.2343 0.9672 15 1 8.1476 -5.6922 1.5949 16 1 6.6221 -7.5765 1.5309 17 1 7.1162 -6.3472 -0.4999 18 6 3.1149 -3.4177 0.5136 19 6 1.9209 -2.4514 0.6232 20 6 2.3558 -1.1496 -0.0065 21 1 2.7198 -1.3306 -1.0178 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 0.8929 -0.5088 24 1 -0.3634 -0.8871 -0.5188 25 1 4.3195 1.5413 0.6094 26 1 5.5792 -1.0436 1.1499 27 1 4.9142 -1.4943 -0.4469 28 1 4.3999 -6.4471 2.2732 29 1 2.8564 -4.3567 1.0030 30 1 3.3175 -3.6121 -0.5397 31 1 1.6654 -2.2918 1.6707 32 1 1.0619 -2.8559 0.0877 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:48 Heat of formation + Delta-G solvation = 57.593909 kcal Electronic energy + Delta-G solvation = -14009.141046 eV Core-core repulsion = 11777.948537 eV Total energy + Delta-G solvation = -2231.192509 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.93473 -35.70074 -32.52466 -32.36303 -29.48817 -28.53291 -25.92662 -24.20178 -21.87134 -20.46592 -19.44333 -19.08907 -16.42244 -15.40450 -15.21603 -14.53418 -14.12954 -13.51730 -13.24657 -12.84489 -12.57191 -12.48868 -11.79072 -11.42582 -11.20457 -11.09538 -10.91686 -10.81543 -10.40499 -10.14389 -9.96399 -9.51477 -9.29426 -9.01855 -8.74364 -8.32556 -7.22632 -6.00629 -4.06487 2.55818 3.22767 3.31186 3.36010 3.38669 4.42455 4.97939 5.17098 5.24576 5.29725 5.54781 5.72634 5.79784 5.86342 5.99745 6.09033 6.25903 6.38225 6.46609 6.52822 6.66227 6.85337 6.88042 7.07438 7.19423 7.44971 7.72360 7.86059 7.97307 8.11096 8.33843 8.43487 8.97620 9.58380 11.05453 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.060436 B = 0.008502 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.191712 B = 3292.619300 C = 3615.936430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.578 5.578 3 N -0.249 5.249 4 C 0.041 3.959 5 C -0.113 4.113 6 H 0.082 0.918 7 C -0.087 4.087 8 C 0.048 3.952 9 H 0.026 0.974 10 C -0.514 4.514 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.104 4.104 19 C -0.111 4.111 20 C 0.126 3.874 21 H 0.058 0.942 22 H 0.034 0.966 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.184 0.816 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.260 0.740 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 7.521 -2.165 8.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.396 5.396 3 N -0.051 5.051 4 C -0.175 4.175 5 C -0.134 4.134 6 H 0.100 0.900 7 C -0.126 4.126 8 C 0.030 3.970 9 H 0.044 0.956 10 C -0.552 4.552 11 H 0.074 0.926 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.143 4.143 19 C -0.150 4.150 20 C 0.020 3.980 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.200 0.800 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.289 8.031 -2.538 9.945 hybrid contribution 1.146 -1.407 0.133 1.820 sum -4.143 6.624 -2.405 8.175 Atomic orbital electron populations 1.20935 0.76226 1.01490 0.99815 1.50647 1.02450 1.00577 1.85961 1.75667 1.02685 1.15001 1.11701 1.26720 0.97024 0.97886 0.95832 1.21738 0.99100 0.91769 1.00771 0.89997 1.21390 0.94137 0.96537 1.00520 1.18798 0.93167 0.89316 0.95750 0.95624 1.21189 1.02698 0.95336 1.36019 0.92634 1.24972 0.95843 0.98196 0.95005 1.69854 1.28488 1.16409 1.38318 0.86681 0.82937 0.79959 0.78558 1.20278 1.21357 1.20333 1.21676 0.93024 0.99346 1.00268 1.21594 0.99847 0.94090 0.99465 1.21865 0.89338 0.88748 0.98018 0.92435 0.94769 0.92206 0.91819 0.79954 0.92503 0.92830 0.92965 0.88701 0.94465 0.92436 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 2.19 11.46 59.85 0.69 2.88 16 2 N -0.58 -10.15 4.23 -114.93 -0.49 -10.64 16 3 N -0.25 -4.40 12.24 32.48 0.40 -4.00 16 4 C 0.04 0.65 12.02 -14.10 -0.17 0.48 16 5 C -0.11 -2.04 2.37 -92.18 -0.22 -2.26 16 6 H 0.08 1.58 7.76 -51.93 -0.40 1.17 16 7 C -0.09 -1.74 5.09 -27.04 -0.14 -1.88 16 8 C 0.05 1.15 2.03 -91.40 -0.19 0.97 16 9 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 10 C -0.51 -13.73 8.51 -34.44 -0.29 -14.02 16 11 H 0.06 1.46 7.73 -52.49 -0.41 1.05 16 12 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 13 N -0.89 -24.94 11.33 55.43 0.63 -24.31 16 14 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.10 -2.39 4.79 -26.48 -0.13 -2.52 16 19 C -0.11 -2.14 5.73 -27.21 -0.16 -2.29 16 20 C 0.13 2.34 3.03 -68.12 -0.21 2.14 16 21 H 0.06 1.15 7.86 -51.93 -0.41 0.75 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 1.08 7.94 -51.93 -0.41 0.67 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 30 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 31 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 257.68 15.07 3.88 3.88 Total: -1.00 -28.77 257.68 -6.38 -35.14 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.87 Total: -1.05 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.90 Total: -14.96 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.54 Total: -38.95 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.77 -6.38 -35.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.738 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds