Wall clock time and date at job start Thu Apr 9 2020 14:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99443 * 2 1 3 5 5 C 1.35048 * 126.40201 * 300.02674 * 4 2 1 6 6 N 1.30497 * 108.70004 * 179.97438 * 5 4 2 7 7 C 1.34121 * 109.26236 * 0.02562 * 6 5 4 8 8 C 1.50701 * 125.99462 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46865 * 334.97491 * 8 7 6 10 10 C 1.52995 * 109.46997 * 214.97453 * 8 7 6 11 11 C 1.50695 * 109.46923 * 94.97292 * 8 7 6 12 12 H 1.07999 * 120.00160 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00073 * 180.02562 * 11 8 7 14 14 N 1.31524 * 119.99959 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00293 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47068 * 90.00229 * 15 13 11 17 17 H 1.48503 * 109.47136 * 209.99716 * 15 13 11 18 18 H 1.48493 * 109.46896 * 329.99991 * 15 13 11 19 19 C 1.34672 * 108.01769 * 359.72755 * 7 6 5 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 27 27 H 1.08003 * 125.64782 * 359.96693 * 5 4 2 28 28 H 1.09001 * 109.47669 * 60.00486 * 10 8 7 29 29 H 1.09008 * 109.46738 * 179.97438 * 10 8 7 30 30 H 1.08995 * 109.47437 * 299.99553 * 10 8 7 31 31 H 0.96995 * 119.99802 * 180.02562 * 14 13 11 32 32 H 1.08001 * 126.59306 * 180.28625 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7727 -0.3438 2.4781 6 7 2.3738 -1.1945 3.2641 7 6 3.0187 -2.1051 2.5200 8 6 3.8342 -3.2595 3.0430 9 1 4.1984 -3.0234 4.0429 10 6 5.0231 -3.5069 2.1123 11 6 2.9751 -4.4962 3.1002 12 1 1.9420 -4.4510 2.7887 13 6 3.5079 -5.6855 3.5504 14 7 4.7661 -5.7407 3.9293 15 14 2.4432 -7.2188 3.6207 16 1 2.5418 -7.9495 2.3317 17 1 2.9108 -8.0960 4.7239 18 1 1.0306 -6.8297 3.8624 19 6 2.8042 -1.8110 1.2234 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.1774 0.4981 2.7995 28 1 5.6446 -2.6124 2.0709 29 1 5.6132 -4.3416 2.4909 30 1 4.6589 -3.7430 1.1125 31 1 5.1410 -6.5775 4.2457 32 1 3.1815 -2.3535 0.3692 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261212590.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:51 Heat of formation + Delta-G solvation = 28.229259 kcal Electronic energy + Delta-G solvation = -13602.335168 eV Core-core repulsion = 11369.869312 eV Total energy + Delta-G solvation = -2232.465856 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.83809 -37.21947 -35.86083 -32.90167 -31.65070 -28.80360 -28.15596 -27.20830 -24.15973 -23.51744 -21.05968 -20.21497 -18.29537 -17.86361 -16.58584 -16.03376 -15.47258 -15.16061 -14.70052 -14.59364 -14.40950 -13.83180 -13.37111 -13.16137 -13.07037 -12.79619 -12.67190 -12.32605 -12.23431 -12.07782 -12.04673 -11.63438 -11.10574 -10.65407 -10.38575 -10.25136 -9.01462 -8.05741 -6.20390 1.34167 1.41166 1.42309 1.53195 2.06425 2.37438 2.57066 3.19172 3.70407 3.92619 4.03649 4.05807 4.20644 4.65994 4.70129 4.72566 4.83381 4.85403 4.95222 5.04185 5.11941 5.18233 5.27624 5.29142 5.54132 5.59970 5.88320 5.99436 6.19886 6.39567 6.61786 6.86165 7.45269 7.48185 8.98492 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.047492 B = 0.007955 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.427953 B = 3519.027730 C = 3750.507565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 C -0.154 4.154 4 N -0.452 5.452 5 C 0.176 3.824 6 N -0.549 5.549 7 C 0.012 3.988 8 C 0.113 3.887 9 H -0.011 1.011 10 C -0.114 4.114 11 C -0.516 4.516 12 H 0.039 0.961 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.276 1.276 19 C -0.067 4.067 20 H 0.044 0.956 21 H 0.104 0.896 22 H 0.067 0.933 23 H 0.104 0.896 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.231 0.769 28 H 0.022 0.978 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.263 0.737 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 12.550 -11.251 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 C -0.212 4.212 4 N -0.137 5.137 5 C -0.106 4.106 6 N -0.269 5.269 7 C -0.116 4.116 8 C 0.093 3.907 9 H 0.007 0.993 10 C -0.173 4.173 11 C -0.554 4.554 12 H 0.058 0.942 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.784 3.216 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.198 4.198 20 H 0.064 0.936 21 H 0.122 0.878 22 H 0.086 0.914 23 H 0.122 0.878 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.121 0.879 27 H 0.247 0.753 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.250 12.532 -10.481 17.873 hybrid contribution -0.221 -1.064 -0.352 1.142 sum -7.471 11.467 -10.833 17.455 Atomic orbital electron populations 1.22159 0.92157 1.02498 1.04616 1.21765 0.96294 0.94603 0.85442 1.22142 1.01291 0.93176 1.04598 1.45783 1.38197 1.21615 1.08119 1.25280 1.03736 1.01967 0.79633 1.70094 1.14301 1.06671 1.35857 1.21216 1.02006 0.97559 0.90800 1.16982 0.91821 0.88659 0.93213 0.99305 1.21554 0.97979 0.99506 0.98219 1.21256 0.96440 0.94499 1.43213 0.94229 1.25738 0.96332 1.01702 0.94807 1.70023 1.13998 1.27202 1.44615 0.85551 0.78720 0.79180 0.78148 1.19342 1.20489 1.20151 1.22404 1.04206 0.93949 0.99279 0.93637 0.87758 0.91382 0.87769 0.91366 0.93164 0.87853 0.75251 0.95862 0.92101 0.94204 0.92814 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.24 71.98 0.67 -1.79 16 2 C 0.12 2.34 3.59 44.99 0.16 2.50 16 3 C -0.15 -2.25 9.24 71.98 0.67 -1.58 16 4 N -0.45 -14.13 2.62 -506.54 -1.33 -15.46 16 5 C 0.18 6.09 11.55 180.26 2.08 8.17 16 6 N -0.55 -26.06 11.25 -188.31 -2.12 -28.18 16 7 C 0.01 0.60 5.96 41.39 0.25 0.85 16 8 C 0.11 6.44 2.75 -12.29 -0.03 6.41 16 9 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 10 C -0.11 -5.90 8.55 71.98 0.62 -5.28 16 11 C -0.52 -31.08 8.55 25.60 0.22 -30.86 16 12 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 13 C 0.01 0.72 5.30 84.65 0.45 1.17 16 14 N -0.92 -55.61 11.32 21.45 0.24 -55.37 16 15 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 19 C -0.07 -2.68 10.69 83.09 0.89 -1.79 16 20 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 1.03 7.95 -2.38 -0.02 1.01 16 23 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 24 H 0.07 0.95 7.95 -2.39 -0.02 0.93 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.23 5.60 8.06 -2.91 -0.02 5.57 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 3.42 6.07 -2.38 -0.01 3.41 16 30 H 0.04 1.87 7.28 -2.39 -0.02 1.86 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.17 16 32 H 0.18 6.45 7.38 -2.91 -0.02 6.42 16 Total: -1.00 -73.85 269.15 5.86 -67.99 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.08 Total: 5.28 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 5.96 Total: -22.21 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.20 Total: -99.00 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.85 5.86 -67.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261212590.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.220 kcal (2) G-P(sol) polarization free energy of solvation -73.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds