Wall clock time and date at job start Thu Apr 9 2020 14:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.35045 * 126.39543 * 60.02405 * 4 2 1 6 6 N 1.30496 * 108.69844 * 180.02562 * 5 4 2 7 7 C 1.34120 * 109.25917 * 359.97438 * 6 5 4 8 8 C 1.34670 * 108.01964 * 359.73081 * 7 6 5 9 9 C 1.50699 * 126.59506 * 180.28113 * 8 7 6 10 10 H 1.09002 * 109.47718 * 205.16894 * 9 8 7 11 11 C 1.53005 * 109.46951 * 85.16481 * 9 8 7 12 12 C 1.50707 * 109.47106 * 325.17029 * 9 8 7 13 13 H 1.08000 * 119.99851 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00187 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99659 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99873 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47253 * 59.99568 * 16 14 12 18 18 H 1.48496 * 109.46742 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46696 * 299.99529 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.08007 * 125.64809 * 359.96939 * 5 4 2 28 28 H 1.08000 * 125.99367 * 180.02562 * 7 6 5 29 29 H 1.08998 * 109.47307 * 299.99955 * 11 9 8 30 30 H 1.08997 * 109.46790 * 60.00870 * 11 9 8 31 31 H 1.09004 * 109.46767 * 180.02562 * 11 9 8 32 32 H 0.96999 * 119.99470 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7735 -0.3435 -2.4780 6 7 2.3744 -1.1945 -3.2639 7 6 3.0183 -2.1057 -2.5197 8 6 2.8134 -1.8046 -1.2231 9 6 3.3522 -2.5527 -0.0311 10 1 2.7025 -2.3843 0.8278 11 6 4.7622 -2.0528 0.2900 12 6 3.4007 -4.0264 -0.3428 13 1 3.0736 -4.3853 -1.3075 14 6 3.8617 -4.9165 0.6039 15 7 4.2595 -4.4794 1.7788 16 14 3.9225 -6.7431 0.2172 17 1 4.8085 -6.9722 -0.9523 18 1 4.4534 -7.4802 1.3919 19 1 2.5544 -7.2285 -0.0956 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.1781 0.4983 -2.7994 28 1 3.6029 -2.9328 -2.8943 29 1 5.4118 -2.2213 -0.5688 30 1 4.7271 -0.9869 0.5156 31 1 5.1521 -2.5942 1.1520 32 1 4.5842 -5.1056 2.4446 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:54 Heat of formation + Delta-G solvation = 43.012613 kcal Electronic energy + Delta-G solvation = -13940.074485 eV Core-core repulsion = 11708.249683 eV Total energy + Delta-G solvation = -2231.824802 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.33179 -35.56233 -34.40313 -31.16720 -29.95829 -27.26351 -27.19728 -25.13450 -22.56320 -21.82623 -20.07014 -18.40044 -16.41997 -15.99651 -14.71463 -14.59146 -14.55278 -13.65452 -13.02516 -12.83570 -12.76647 -12.43937 -12.23132 -11.67446 -11.51914 -11.28336 -11.05022 -10.90725 -10.85821 -10.52901 -10.17789 -9.88880 -9.26328 -8.89373 -8.75390 -8.39779 -7.29818 -6.05574 -4.10691 2.96290 3.32448 3.36051 3.38863 3.46888 4.06136 4.42044 4.80062 5.08622 5.20840 5.28355 5.29802 5.53100 5.59801 5.72600 5.82820 5.98550 6.07730 6.22070 6.44243 6.66894 6.82237 6.89984 7.12507 7.17122 7.64711 7.69430 7.85216 7.99417 8.09625 8.35077 8.90620 8.94659 9.54253 11.01265 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.037921 B = 0.009860 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.196371 B = 2838.943344 C = 3103.378735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 C -0.158 4.158 4 N -0.458 5.458 5 C 0.141 3.859 6 N -0.501 5.501 7 C -0.048 4.048 8 C 0.037 3.963 9 C 0.110 3.890 10 H 0.030 0.970 11 C -0.129 4.129 12 C -0.505 4.505 13 H 0.062 0.938 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.277 1.277 20 H 0.065 0.935 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.187 0.813 28 H 0.163 0.837 29 H 0.032 0.968 30 H 0.004 0.996 31 H 0.088 0.912 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 9.034 -0.612 10.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.216 4.216 4 N -0.143 5.143 5 C -0.140 4.140 6 N -0.220 5.220 7 C -0.193 4.193 8 C -0.078 4.078 9 C 0.091 3.909 10 H 0.048 0.952 11 C -0.187 4.187 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.122 0.878 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.203 0.797 28 H 0.180 0.820 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.107 0.893 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.867 9.058 -1.196 10.352 hybrid contribution 0.003 -0.951 0.717 1.191 sum -4.864 8.108 -0.479 9.467 Atomic orbital electron populations 1.22131 0.93941 1.03160 1.02413 1.21330 0.94852 0.93519 0.88134 1.22133 1.02234 0.94746 1.02474 1.45530 1.38946 1.23022 1.06798 1.24349 1.06713 1.03036 0.79858 1.70135 1.12545 1.05293 1.34037 1.21896 1.06509 1.01485 0.89438 1.22391 0.96539 0.88943 0.99878 1.17343 0.92694 0.93077 0.87827 0.95247 1.21765 0.98414 0.96032 1.02482 1.21066 1.42766 0.89970 1.00568 0.91930 1.24938 0.95087 0.99000 0.94928 1.69868 1.43487 1.34621 1.05200 0.86573 0.78493 0.84747 0.77758 1.20070 1.21323 1.20253 0.91638 0.92155 0.91040 0.87836 0.92129 0.91022 0.91813 0.79658 0.81953 0.94917 0.97702 0.89348 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.24 37.16 0.34 -1.61 16 2 C 0.13 1.87 3.55 -67.93 -0.24 1.62 16 3 C -0.16 -1.89 9.24 37.16 0.34 -1.54 16 4 N -0.46 -8.59 2.62 -106.92 -0.28 -8.87 16 5 C 0.14 2.58 11.55 -90.38 -1.04 1.53 16 6 N -0.50 -10.81 11.25 -14.67 -0.16 -10.98 16 7 C -0.05 -1.10 10.79 -17.82 -0.19 -1.29 16 8 C 0.04 0.83 5.87 -81.60 -0.48 0.35 16 9 C 0.11 2.73 2.43 -92.92 -0.23 2.51 16 10 H 0.03 0.77 7.00 -51.93 -0.36 0.41 16 11 C -0.13 -3.09 8.95 37.16 0.33 -2.76 16 12 C -0.51 -13.67 8.26 -34.44 -0.28 -13.95 16 13 H 0.06 1.70 6.84 -52.49 -0.36 1.34 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.78 11.32 55.43 0.63 -24.16 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.10 1.71 6.71 -51.93 -0.35 1.36 16 24 H 0.06 0.65 7.95 -51.93 -0.41 0.24 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.19 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.16 3.72 7.66 -52.49 -0.40 3.32 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 31 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 266.64 15.07 4.02 4.02 Total: -1.00 -29.63 266.64 -7.07 -36.69 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.71 Total: 0.73 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.54 Total: -13.56 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.18 Total: -44.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.63 -7.07 -36.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.708 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds