Wall clock time and date at job start Thu Apr 9 2020 14:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.34953 * 126.12546 * 59.69057 * 4 2 1 6 6 H 0.97000 * 126.03120 * 0.03378 * 5 4 2 7 7 N 1.40080 * 107.92587 * 179.90718 * 5 4 2 8 8 C 1.30839 * 108.20684 * 0.35929 * 7 5 4 9 9 C 1.35311 * 126.12941 * 240.00046 * 4 2 1 10 10 C 1.50701 * 126.04073 * 359.93941 * 9 4 2 11 11 H 1.08998 * 109.47100 * 0.02562 * 10 9 4 12 12 C 1.53007 * 109.46930 * 119.99809 * 10 9 4 13 13 C 1.50695 * 109.47542 * 239.99991 * 10 9 4 14 14 H 1.08001 * 119.99746 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00075 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00077 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99897 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47034 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47164 * 119.99431 * 17 15 13 20 20 H 1.48500 * 109.46979 * 239.99685 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.07997 * 125.90042 * 179.74066 * 8 7 5 29 29 H 1.08998 * 109.47067 * 300.00060 * 12 10 9 30 30 H 1.08998 * 109.46652 * 60.00432 * 12 10 9 31 31 H 1.08998 * 109.46665 * 180.02562 * 12 10 9 32 32 H 0.97000 * 120.00488 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7790 -0.3623 -2.5093 6 1 1.2410 0.3907 -2.7998 7 7 2.4326 -1.2787 -3.3432 8 6 3.0498 -2.1507 -2.5879 9 6 2.8135 -1.8151 -1.2507 10 6 3.3370 -2.5532 -0.0456 11 1 2.9889 -2.0601 0.8620 12 6 2.8268 -3.9955 -0.0695 13 6 4.8437 -2.5529 -0.0716 14 1 5.3697 -2.0665 -0.8798 15 6 5.5508 -3.1736 0.9363 16 7 4.9103 -3.7654 1.9206 17 14 7.4185 -3.1726 0.9043 18 1 7.8926 -2.4447 -0.3001 19 1 7.9341 -2.5007 2.1241 20 1 7.9136 -4.5721 0.8632 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 3.6393 -2.9857 -2.9366 29 1 1.7369 -3.9957 -0.0506 30 1 3.1746 -4.4888 -0.9771 31 1 3.2050 -4.5291 0.8024 32 1 5.4077 -4.2018 2.6299 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:59 Heat of formation + Delta-G solvation = 47.647694 kcal Electronic energy + Delta-G solvation = -13872.884224 eV Core-core repulsion = 11641.260415 eV Total energy + Delta-G solvation = -2231.623810 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57737 -35.08794 -34.30561 -31.25865 -29.71798 -27.54598 -26.96363 -25.00439 -22.33074 -21.51334 -20.27873 -18.16649 -16.54354 -15.71234 -14.63136 -14.45627 -14.04849 -13.81166 -12.95878 -12.69810 -12.66350 -12.50322 -12.06182 -11.35840 -10.98635 -10.96835 -10.89035 -10.73562 -10.67473 -10.27269 -10.12472 -9.90309 -9.37518 -8.87008 -8.71659 -8.27415 -7.34602 -5.92126 -3.97069 2.61726 3.33459 3.41717 3.46286 3.57699 3.74912 4.50999 5.03382 5.16706 5.38299 5.41548 5.66763 5.72936 5.77896 5.93766 6.03903 6.19386 6.35715 6.47648 6.59020 6.63469 6.91722 7.01802 7.19800 7.38015 7.61325 7.80220 8.00725 8.03337 8.21424 8.44653 8.57995 9.06213 9.67114 11.13367 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.033102 B = 0.010134 C = 0.009512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.661587 B = 2762.196740 C = 2942.964264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.032 4.032 3 C -0.143 4.143 4 C 0.061 3.939 5 N -0.489 5.489 6 H 0.424 0.576 7 N -0.319 5.319 8 C 0.059 3.941 9 C -0.171 4.171 10 C 0.107 3.893 11 H 0.032 0.968 12 C -0.130 4.130 13 C -0.499 4.499 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.285 1.285 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.175 0.825 29 H 0.005 0.995 30 H 0.025 0.975 31 H 0.082 0.918 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 6.556 -2.795 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.065 4.065 5 N -0.198 5.198 6 H 0.266 0.734 7 N -0.142 5.142 8 C -0.127 4.127 9 C -0.182 4.182 10 C 0.087 3.913 11 H 0.050 0.950 12 C -0.188 4.188 13 C -0.537 4.537 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.192 0.808 29 H 0.024 0.976 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.049 6.780 -3.827 10.503 hybrid contribution 1.037 0.072 0.622 1.211 sum -6.012 6.853 -3.205 9.663 Atomic orbital electron populations 1.21834 0.94911 1.02133 1.01173 1.19808 0.94959 0.95456 0.94977 1.21817 1.02115 0.95093 1.01009 1.20655 1.01582 0.98168 0.86125 1.45975 1.43845 1.26247 1.03775 0.73426 1.77131 1.15225 1.03894 1.17942 1.23687 0.98468 0.98198 0.92320 1.20659 1.02601 0.97996 0.96934 1.17241 0.94505 0.91006 0.88535 0.95043 1.21753 0.95418 0.99729 1.01880 1.21201 0.90736 1.33931 1.07846 0.92702 1.24941 0.98028 0.95522 0.95549 1.69889 1.34813 1.36787 1.11708 0.86602 0.86332 0.77627 0.77849 1.19858 1.21194 1.21130 0.92210 0.93524 0.92208 0.87798 0.93612 0.92270 0.91847 0.80767 0.97619 0.95549 0.89911 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 37.16 0.34 -1.48 16 2 C -0.03 -0.50 3.28 -91.77 -0.30 -0.80 16 3 C -0.14 -1.92 9.18 37.16 0.34 -1.58 16 4 C 0.06 1.13 5.72 -82.26 -0.47 0.66 16 5 N -0.49 -8.46 7.36 33.48 0.25 -8.21 16 6 H 0.42 5.82 8.96 -182.61 -1.64 4.18 16 7 N -0.32 -6.34 12.70 30.63 0.39 -5.95 16 8 C 0.06 1.24 11.52 -17.36 -0.20 1.04 16 9 C -0.17 -3.76 4.74 -105.05 -0.50 -4.26 16 10 C 0.11 2.64 2.62 -92.92 -0.24 2.39 16 11 H 0.03 0.82 6.38 -51.93 -0.33 0.49 16 12 C -0.13 -3.14 8.86 37.16 0.33 -2.81 16 13 C -0.50 -13.54 8.42 -34.44 -0.29 -13.83 16 14 H 0.05 1.52 7.73 -52.49 -0.41 1.11 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.10 1.83 6.38 -51.93 -0.33 1.50 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.18 3.46 8.06 -52.49 -0.42 3.04 16 29 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 31 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 267.96 15.07 4.04 4.04 Total: -1.00 -29.37 267.96 -6.76 -36.13 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.95 Total: 1.36 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -1.09 Total: -19.12 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 1.26 Total: -38.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.37 -6.76 -36.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.776 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds