Wall clock time and date at job start Thu Apr 9 2020 14:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28334 * 124.89891 * 2 1 4 4 C 1.33486 * 117.83333 * 179.97438 * 3 2 1 5 5 C 1.33866 * 113.18557 * 0.08719 * 4 3 2 6 6 S 1.70747 * 124.90562 * 179.97438 * 2 1 3 7 7 C 1.51712 * 110.89605 * 179.89870 * 5 4 3 8 8 H 1.08999 * 110.37296 * 223.88037 * 7 5 4 9 9 C 1.50702 * 110.37113 * 101.66174 * 7 5 4 10 10 H 1.08002 * 120.00299 * 241.45983 * 9 7 5 11 11 C 1.37884 * 119.99942 * 61.17541 * 9 7 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.54301 * 104.81254 * 342.83057 * 7 5 4 18 18 C 1.52620 * 137.15315 * 180.17071 * 4 3 2 19 19 H 1.09000 * 109.47165 * 90.02274 * 1 2 3 20 20 H 1.09005 * 109.47297 * 210.02595 * 1 2 3 21 21 H 1.08996 * 109.47465 * 330.02045 * 1 2 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 23 23 H 1.09001 * 110.97568 * 144.29473 * 17 7 5 24 24 H 1.09000 * 110.96752 * 268.06217 * 17 7 5 25 25 H 1.08996 * 110.31903 * 316.28244 * 18 4 3 26 26 H 1.08999 * 110.31840 * 78.47805 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2412 1.0526 0.0000 4 6 3.5659 0.8884 0.0005 5 6 3.9376 -0.3977 -0.0009 6 16 2.4840 -1.4003 0.0006 7 6 5.4495 -0.5240 -0.0027 8 1 5.7655 -1.2890 -0.7119 9 6 5.9501 -0.8533 1.3801 10 1 6.6165 -0.1730 1.8894 11 6 5.5525 -2.0204 1.9974 12 7 4.7409 -2.8488 1.3772 13 14 6.1669 -2.4248 3.7144 14 1 5.2285 -1.8657 4.7204 15 1 6.2465 -3.8987 3.8773 16 1 7.5141 -1.8317 3.9107 17 6 5.9608 0.8638 -0.4426 18 6 4.8041 1.7807 0.0038 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 -0.8898 0.5143 21 1 -0.3634 0.8901 0.5135 22 1 4.4616 -3.6700 1.8113 23 1 6.8848 1.1213 0.0751 24 1 6.0963 0.9050 -1.5233 25 1 4.6797 2.6032 -0.7004 26 1 4.9910 2.1649 1.0066 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220259.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:03 Heat of formation + Delta-G solvation = 35.841900 kcal Electronic energy + Delta-G solvation = -11659.932956 eV Core-core repulsion = 9636.998323 eV Total energy + Delta-G solvation = -2022.934633 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.13506 -35.58892 -32.43640 -30.23521 -27.68743 -26.14694 -24.13364 -21.65171 -19.82797 -17.85287 -16.85770 -16.37052 -14.57503 -14.37963 -13.58559 -13.19395 -12.81963 -12.68438 -12.36081 -11.90179 -11.59131 -11.23060 -11.03325 -10.75818 -10.51209 -10.35658 -9.93465 -9.61978 -9.42514 -8.75008 -8.33437 -7.87231 -7.29202 -6.17297 -4.24860 2.01774 2.52264 3.18597 3.24613 3.30196 3.32265 3.85430 4.31554 4.75243 5.13674 5.64647 5.78254 5.83572 5.88947 5.99131 6.16360 6.37446 6.48764 6.79557 6.81785 6.92988 7.06287 7.31568 7.51594 7.75156 8.12783 8.75835 8.84450 9.38656 10.87173 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.014055 C = 0.011155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.369201 B = 1991.668232 C = 2509.494296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.039 4.039 3 N -0.469 5.469 4 C -0.034 4.034 5 C -0.131 4.131 6 S 0.175 5.825 7 C 0.110 3.890 8 H 0.038 0.962 9 C -0.504 4.504 10 H 0.065 0.935 11 C 0.061 3.939 12 N -0.877 5.877 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.112 4.112 18 C -0.017 4.017 19 H 0.069 0.931 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.266 0.734 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 2.636 -2.513 5.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.317 4.317 3 N -0.185 5.185 4 C -0.162 4.162 5 C -0.253 4.253 6 S 0.431 5.569 7 C 0.089 3.911 8 H 0.056 0.944 9 C -0.542 4.542 10 H 0.084 0.916 11 C -0.142 4.142 12 N -0.514 5.514 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.151 4.151 18 C -0.057 4.057 19 H 0.088 0.912 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.251 1.871 -2.490 5.270 hybrid contribution 0.687 0.374 1.177 1.413 sum -3.564 2.245 -1.313 4.412 Atomic orbital electron populations 1.20140 0.86958 1.02645 1.02232 1.26611 1.00920 0.93876 1.10275 1.65229 1.04807 1.33238 1.15239 1.21408 0.89575 0.94801 1.10419 1.27568 1.02882 0.94504 1.00323 1.83824 0.95959 1.09088 1.68062 1.18074 0.83103 0.92487 0.97455 0.94381 1.21160 1.27696 1.04884 1.00451 0.91638 1.25029 0.94827 0.96118 0.98229 1.69763 1.32650 1.11220 1.37810 0.86491 0.79341 0.77579 0.84117 1.20640 1.20974 1.19639 1.22385 0.97191 0.96491 0.99057 1.20548 0.88723 0.95543 1.00924 0.91196 0.91197 0.90903 0.92383 0.90709 0.92772 0.92518 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.46 36.00 0.38 -0.55 15 2 C -0.04 -0.82 7.37 -13.74 -0.10 -0.92 15 3 N -0.47 -10.94 10.54 -7.24 -0.08 -11.02 15 4 C -0.03 -0.80 7.70 -82.45 -0.63 -1.43 15 5 C -0.13 -3.25 5.93 -35.34 -0.21 -3.46 15 6 S 0.17 3.95 21.72 -107.50 -2.33 1.62 15 7 C 0.11 2.72 2.84 -91.74 -0.26 2.46 15 8 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 9 C -0.50 -13.35 8.54 -34.44 -0.29 -13.65 15 10 H 0.07 1.69 7.57 -52.49 -0.40 1.30 15 11 C 0.06 1.64 5.32 -17.82 -0.09 1.54 15 12 N -0.88 -23.90 11.17 55.43 0.62 -23.28 15 13 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 17 C -0.11 -2.27 6.63 -25.42 -0.17 -2.44 15 18 C -0.02 -0.35 6.79 -26.30 -0.18 -0.53 15 19 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 23 H 0.07 1.41 7.74 -51.93 -0.40 1.01 15 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 236.48 15.07 3.56 3.56 Total: -1.00 -29.31 236.48 -7.71 -37.01 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -2.89 Total: -4.73 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.57 Total: -18.97 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.54 Total: -34.30 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.33 Total: 1.62 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.31 -7.71 -37.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220259.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.856 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds