Wall clock time and date at job start Thu Apr 9 2020 14:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28334 * 124.89891 * 2 1 4 4 C 1.33486 * 117.83333 * 179.97438 * 3 2 1 5 5 C 1.33866 * 113.18557 * 0.08719 * 4 3 2 6 6 S 1.70747 * 124.90562 * 179.97438 * 2 1 3 7 7 C 1.51712 * 110.89605 * 179.89870 * 5 4 3 8 8 H 1.08999 * 110.37296 * 223.88037 * 7 5 4 9 9 C 1.50702 * 110.37113 * 101.66174 * 7 5 4 10 10 H 1.08002 * 120.00299 * 241.45983 * 9 7 5 11 11 C 1.37884 * 119.99942 * 61.17541 * 9 7 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.54301 * 104.81254 * 342.83057 * 7 5 4 18 18 C 1.52620 * 137.15315 * 180.17071 * 4 3 2 19 19 H 1.09000 * 109.47165 * 90.02274 * 1 2 3 20 20 H 1.09005 * 109.47297 * 210.02595 * 1 2 3 21 21 H 1.08996 * 109.47465 * 330.02045 * 1 2 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 23 23 H 1.09001 * 110.97568 * 144.29473 * 17 7 5 24 24 H 1.09000 * 110.96752 * 268.06217 * 17 7 5 25 25 H 1.08996 * 110.31903 * 316.28244 * 18 4 3 26 26 H 1.08999 * 110.31840 * 78.47805 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2412 1.0526 0.0000 4 6 3.5659 0.8884 0.0005 5 6 3.9376 -0.3977 -0.0009 6 16 2.4840 -1.4003 0.0006 7 6 5.4495 -0.5240 -0.0027 8 1 5.7655 -1.2890 -0.7119 9 6 5.9501 -0.8533 1.3801 10 1 6.6165 -0.1730 1.8894 11 6 5.5525 -2.0204 1.9974 12 7 4.7409 -2.8488 1.3772 13 14 6.1669 -2.4248 3.7144 14 1 5.2285 -1.8657 4.7204 15 1 6.2465 -3.8987 3.8773 16 1 7.5141 -1.8317 3.9107 17 6 5.9608 0.8638 -0.4426 18 6 4.8041 1.7807 0.0038 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 -0.8898 0.5143 21 1 -0.3634 0.8901 0.5135 22 1 4.4616 -3.6700 1.8113 23 1 6.8848 1.1213 0.0751 24 1 6.0963 0.9050 -1.5233 25 1 4.6797 2.6032 -0.7004 26 1 4.9910 2.1649 1.0066 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261220259.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:03 Heat of formation + Delta-G solvation = 18.598832 kcal Electronic energy + Delta-G solvation = -11660.680671 eV Core-core repulsion = 9636.998323 eV Total energy + Delta-G solvation = -2023.682348 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.87176 -37.32564 -34.37727 -31.71213 -29.49540 -27.84330 -25.98902 -23.33338 -21.53728 -19.65075 -18.63932 -18.23540 -16.49150 -16.08466 -15.15174 -14.79326 -14.53570 -14.24913 -14.19600 -13.40509 -13.07425 -12.94608 -12.84814 -12.52026 -12.25280 -12.05954 -11.70266 -11.46882 -11.21858 -10.70333 -10.13663 -9.69352 -9.05106 -8.15857 -6.30391 0.26861 0.80192 1.37704 1.40525 1.46942 1.49759 2.09515 2.39179 3.10067 3.17305 4.11030 4.12972 4.40465 4.54810 4.69390 4.74157 4.83388 5.07647 5.09472 5.16527 5.22519 5.39433 5.55924 5.63266 5.77103 6.17219 6.75707 7.09256 7.35623 8.86746 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.014055 C = 0.011155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.369201 B = 1991.668232 C = 2509.494296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.017 4.017 3 N -0.494 5.494 4 C -0.039 4.039 5 C -0.174 4.174 6 S 0.153 5.847 7 C 0.101 3.899 8 H 0.008 0.992 9 C -0.522 4.522 10 H 0.066 0.934 11 C 0.015 3.985 12 N -0.899 5.899 13 Si 0.955 3.045 14 H -0.284 1.284 15 H -0.281 1.281 16 H -0.263 1.263 17 C -0.101 4.101 18 C -0.015 4.015 19 H 0.096 0.904 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.265 0.735 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 3.551 -2.274 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.296 4.296 3 N -0.210 5.210 4 C -0.167 4.167 5 C -0.296 4.296 6 S 0.410 5.590 7 C 0.080 3.920 8 H 0.026 0.974 9 C -0.560 4.560 10 H 0.084 0.916 11 C -0.185 4.185 12 N -0.537 5.537 13 Si 0.780 3.220 14 H -0.211 1.211 15 H -0.206 1.206 16 H -0.187 1.187 17 C -0.140 4.140 18 C -0.055 4.055 19 H 0.115 0.885 20 H 0.109 0.891 21 H 0.104 0.896 22 H 0.074 0.926 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.934 2.792 -2.257 6.102 hybrid contribution 0.810 0.089 1.048 1.327 sum -4.125 2.881 -1.209 5.174 Atomic orbital electron populations 1.20410 0.82900 1.04320 1.04486 1.27583 1.03047 0.92351 1.06622 1.65375 1.04715 1.33776 1.17112 1.22019 0.90572 0.95200 1.08939 1.27616 1.03296 0.95483 1.03200 1.83740 0.96279 1.10403 1.68622 1.18075 0.83768 0.94061 0.96078 0.97382 1.21464 1.28005 1.05163 1.01395 0.91595 1.25750 0.95137 0.96229 1.01421 1.69893 1.33519 1.11384 1.38885 0.85597 0.78989 0.77352 0.80028 1.21080 1.20642 1.18730 1.22347 0.97546 0.93717 1.00418 1.20636 0.87249 0.95798 1.01790 0.88523 0.89090 0.89576 0.92605 0.89471 0.90808 0.89778 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.46 71.24 0.75 -0.95 15 2 C -0.02 -0.69 7.37 88.62 0.65 -0.04 15 3 N -0.49 -22.26 10.54 -176.80 -1.86 -24.12 15 4 C -0.04 -1.82 7.70 41.93 0.32 -1.50 15 5 C -0.17 -8.69 5.93 25.01 0.15 -8.55 15 6 S 0.15 6.91 21.72 -56.49 -1.23 5.69 15 7 C 0.10 5.06 2.84 -11.52 -0.03 5.03 15 8 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 9 C -0.52 -27.88 8.54 25.60 0.22 -27.66 15 10 H 0.07 3.40 7.57 -2.91 -0.02 3.38 15 11 C 0.02 0.83 5.32 84.66 0.45 1.28 15 12 N -0.90 -49.75 11.17 21.45 0.24 -49.51 15 13 Si 0.95 42.83 29.54 68.60 2.03 44.86 15 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 16 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 17 C -0.10 -3.99 6.63 31.44 0.21 -3.78 15 18 C -0.01 -0.58 6.79 30.88 0.21 -0.37 15 19 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 20 H 0.09 2.17 8.14 -2.38 -0.02 2.15 15 21 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 22 H 0.26 14.04 8.31 -92.70 -0.77 13.27 15 23 H 0.09 3.17 7.74 -2.39 -0.02 3.15 15 24 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.08 2.81 8.14 -2.39 -0.02 2.80 15 26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 Total: -1.00 -62.37 236.48 3.27 -59.10 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: 1.17 Total: 0.53 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 2.92 Total: -36.54 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.62 Total: -73.63 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -1.23 Total: 5.69 kcal Total: -62.37 3.27 -59.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220259.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.701 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds