Wall clock time and date at job start Thu Apr 9 2020 14:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.41740 * 127.75689 * 2 1 4 4 C 1.29267 * 112.82021 * 155.47654 * 3 2 1 5 5 C 1.48882 * 107.57327 * 0.23445 * 4 3 2 6 6 H 1.08990 * 109.24077 * 267.06807 * 5 4 3 7 7 C 1.50818 * 120.11923 * 139.74249 * 5 4 3 8 8 C 1.54021 * 106.73772 * 180.12362 * 7 5 4 9 9 C 1.52953 * 112.51921 * 55.05231 * 8 7 5 10 10 C 1.54182 * 112.26178 * 308.31833 * 9 8 7 11 11 H 1.08998 * 110.09708 * 297.38022 * 10 9 8 12 12 C 1.50706 * 110.09685 * 175.84514 * 10 9 8 13 13 H 1.08008 * 119.99569 * 269.87676 * 12 10 9 14 14 C 1.37867 * 120.00375 * 89.87843 * 12 10 9 15 15 N 1.31519 * 120.00036 * 353.29400 * 14 12 10 16 16 Si 1.86795 * 120.00142 * 173.29441 * 14 12 10 17 17 H 1.48495 * 109.47127 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47314 * 239.99694 * 16 14 12 19 19 H 1.48510 * 109.47005 * 120.00035 * 16 14 12 20 20 C 1.45503 * 127.75605 * 180.02562 * 2 1 3 21 21 H 1.09000 * 110.72361 * 99.74391 * 20 2 1 22 22 H 1.09004 * 109.47231 * 269.97607 * 1 2 3 23 23 H 1.09002 * 109.47201 * 29.96898 * 1 2 3 24 24 H 1.08995 * 109.47136 * 149.97509 * 1 2 3 25 25 H 1.07997 * 126.21558 * 180.22024 * 4 3 2 26 26 H 1.09005 * 110.00013 * 299.42893 * 7 5 4 27 27 H 1.09001 * 109.99581 * 60.81500 * 7 5 4 28 28 H 1.09002 * 108.96060 * 176.72442 * 8 7 5 29 29 H 1.09009 * 108.95946 * 295.47089 * 8 7 5 30 30 H 1.08996 * 109.64207 * 187.01265 * 9 8 7 31 31 H 1.08999 * 107.97173 * 68.48318 * 9 8 7 32 32 H 0.97005 * 120.00087 * 354.58074 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3329 1.1206 0.0000 4 6 3.4969 0.8532 0.4945 5 6 3.4985 -0.5822 0.8897 6 1 3.2101 -0.6666 1.9374 7 6 4.7170 -1.4348 0.6389 8 6 4.3847 -2.8467 1.1572 9 6 3.1086 -3.4143 0.5336 10 6 1.9176 -2.4425 0.6535 11 1 1.6798 -2.2692 1.7031 12 6 0.7167 -3.0043 -0.0629 13 1 0.5549 -2.7764 -1.1063 14 6 -0.1755 -3.8090 0.6133 15 7 0.0879 -4.1944 1.8428 16 14 -1.7583 -4.3519 -0.2168 17 1 -1.8163 -3.7876 -1.5891 18 1 -2.9211 -3.8656 0.5685 19 1 -1.7956 -5.8347 -0.2898 20 6 2.3559 -1.1504 -0.0005 21 1 2.7285 -1.3492 -1.0054 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8903 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 4.3191 1.5453 0.6014 26 1 4.9333 -1.4711 -0.4289 27 1 5.5725 -1.0308 1.1801 28 1 5.2223 -3.5097 0.9404 29 1 4.2385 -2.8024 2.2365 30 1 2.8498 -4.3545 1.0205 31 1 3.3058 -3.6053 -0.5212 32 1 0.9435 -3.9788 2.2460 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:09 Heat of formation + Delta-G solvation = 52.587051 kcal Electronic energy + Delta-G solvation = -14375.204490 eV Core-core repulsion = 12143.794867 eV Total energy + Delta-G solvation = -2231.409623 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.87195 -35.63628 -33.43074 -31.54306 -29.11298 -28.72983 -25.59257 -24.13795 -21.60216 -20.88503 -19.33697 -19.24539 -16.87822 -15.25411 -14.97904 -14.20732 -13.95873 -13.75556 -13.06726 -12.76010 -12.68048 -12.32983 -11.95271 -11.43625 -11.21525 -11.10496 -10.81342 -10.53706 -10.20905 -10.16266 -10.01860 -9.86326 -9.41363 -9.26701 -8.48509 -8.30178 -6.86968 -6.39571 -4.10245 2.72577 3.40688 3.42387 3.56089 3.59424 4.47725 5.07116 5.21164 5.25922 5.42145 5.50979 5.81581 5.89790 6.06203 6.13151 6.19060 6.26034 6.34814 6.39287 6.44007 6.62055 6.71410 6.74796 6.91014 6.92834 7.19909 7.29752 7.53901 8.16401 8.25574 8.40846 8.66696 8.82997 9.60269 10.98289 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.013128 C = 0.010135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.084746 B = 2132.373219 C = 2761.969261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.553 5.553 3 N -0.240 5.240 4 C 0.013 3.987 5 C -0.124 4.124 6 H 0.079 0.921 7 C -0.090 4.090 8 C -0.122 4.122 9 C -0.111 4.111 10 C 0.041 3.959 11 H 0.037 0.963 12 C -0.587 4.587 13 H 0.049 0.951 14 C 0.024 3.976 15 N -0.910 5.910 16 Si 1.064 2.936 17 H -0.288 1.288 18 H -0.285 1.285 19 H -0.288 1.288 20 C 0.150 3.850 21 H 0.046 0.954 22 H 0.031 0.969 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.178 0.822 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 5.140 -1.742 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.371 5.371 3 N -0.042 5.042 4 C -0.202 4.202 5 C -0.145 4.145 6 H 0.097 0.903 7 C -0.129 4.129 8 C -0.160 4.160 9 C -0.150 4.150 10 C 0.021 3.979 11 H 0.055 0.945 12 C -0.625 4.625 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.545 5.545 16 Si 0.892 3.108 17 H -0.214 1.214 18 H -0.212 1.212 19 H -0.215 1.215 20 C 0.044 3.956 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.195 0.805 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.809 4.984 -1.945 6.567 hybrid contribution 1.958 0.074 0.084 1.961 sum 5.767 5.058 -1.861 7.893 Atomic orbital electron populations 1.21128 0.75197 1.01797 1.00089 1.50496 1.02791 0.99486 1.84310 1.75420 1.02536 1.16485 1.09806 1.26319 0.97651 0.97199 0.99019 1.21652 0.98473 0.92603 1.01756 0.90321 1.21082 0.95938 0.95027 1.00849 1.21792 0.98521 0.95346 1.00333 1.21944 0.93526 1.00079 0.99412 1.18859 0.93414 0.88956 0.96634 0.94496 1.21847 1.08973 1.33280 0.98395 0.93226 1.25737 1.02697 0.93928 0.95719 1.70725 1.25852 1.44032 1.13940 0.83628 0.75617 0.76504 0.75017 1.21420 1.21172 1.21472 1.21868 0.87353 0.89848 0.96513 0.93631 0.95069 0.93635 0.89195 0.80490 0.92116 0.92222 0.93072 0.93073 0.92416 0.93816 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.30 11.08 59.85 0.66 3.96 16 2 N -0.55 -12.11 4.23 -114.73 -0.49 -12.60 16 3 N -0.24 -4.79 12.22 32.43 0.40 -4.39 16 4 C 0.01 0.22 12.01 -14.22 -0.17 0.05 16 5 C -0.12 -2.25 2.36 -92.35 -0.22 -2.47 16 6 H 0.08 1.55 7.70 -51.93 -0.40 1.15 16 7 C -0.09 -1.42 5.86 -27.29 -0.16 -1.58 16 8 C -0.12 -2.12 5.81 -26.22 -0.15 -2.27 16 9 C -0.11 -2.38 5.08 -26.14 -0.13 -2.51 16 10 C 0.04 0.99 1.59 -92.00 -0.15 0.85 16 11 H 0.04 0.99 6.74 -51.93 -0.35 0.63 16 12 C -0.59 -15.54 6.23 -34.44 -0.21 -15.75 16 13 H 0.05 1.35 7.56 -52.48 -0.40 0.95 16 14 C 0.02 0.65 5.45 -17.82 -0.10 0.56 16 15 N -0.91 -26.45 13.56 55.43 0.75 -25.70 16 16 Si 1.06 24.46 29.91 -169.99 -5.08 19.38 16 17 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.15 3.28 2.49 -67.94 -0.17 3.11 16 21 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 22 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 1.97 6.17 -51.93 -0.32 1.65 16 25 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 26 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.06 1.34 7.80 -51.93 -0.40 0.93 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.27 7.85 6.53 -40.82 -0.27 7.59 16 LS Contribution 254.44 15.07 3.83 3.83 Total: -1.00 -29.43 254.44 -6.10 -35.53 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.71 Total: 0.01 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.80 Total: -16.06 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.66 Total: -42.69 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.38 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.43 -6.10 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.121 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds