Wall clock time and date at job start Thu Apr 9 2020 14:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.41740 * 127.75689 * 2 1 4 4 C 1.29267 * 112.82021 * 155.47654 * 3 2 1 5 5 C 1.48882 * 107.57327 * 0.23445 * 4 3 2 6 6 H 1.08990 * 109.24077 * 267.06807 * 5 4 3 7 7 C 1.50818 * 120.11923 * 139.74249 * 5 4 3 8 8 C 1.54021 * 106.73772 * 180.12362 * 7 5 4 9 9 C 1.52953 * 112.51921 * 55.05231 * 8 7 5 10 10 C 1.54182 * 112.26178 * 308.31833 * 9 8 7 11 11 H 1.08998 * 110.09708 * 297.38022 * 10 9 8 12 12 C 1.50706 * 110.09685 * 175.84514 * 10 9 8 13 13 H 1.08008 * 119.99569 * 269.87676 * 12 10 9 14 14 C 1.37867 * 120.00375 * 89.87843 * 12 10 9 15 15 N 1.31519 * 120.00036 * 353.29400 * 14 12 10 16 16 Si 1.86795 * 120.00142 * 173.29441 * 14 12 10 17 17 H 1.48495 * 109.47127 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47314 * 239.99694 * 16 14 12 19 19 H 1.48510 * 109.47005 * 120.00035 * 16 14 12 20 20 C 1.45503 * 127.75605 * 180.02562 * 2 1 3 21 21 H 1.09000 * 110.72361 * 99.74391 * 20 2 1 22 22 H 1.09004 * 109.47231 * 269.97607 * 1 2 3 23 23 H 1.09002 * 109.47201 * 29.96898 * 1 2 3 24 24 H 1.08995 * 109.47136 * 149.97509 * 1 2 3 25 25 H 1.07997 * 126.21558 * 180.22024 * 4 3 2 26 26 H 1.09005 * 110.00013 * 299.42893 * 7 5 4 27 27 H 1.09001 * 109.99581 * 60.81500 * 7 5 4 28 28 H 1.09002 * 108.96060 * 176.72442 * 8 7 5 29 29 H 1.09009 * 108.95946 * 295.47089 * 8 7 5 30 30 H 1.08996 * 109.64207 * 187.01265 * 9 8 7 31 31 H 1.08999 * 107.97173 * 68.48318 * 9 8 7 32 32 H 0.97005 * 120.00087 * 354.58074 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3329 1.1206 0.0000 4 6 3.4969 0.8532 0.4945 5 6 3.4985 -0.5822 0.8897 6 1 3.2101 -0.6666 1.9374 7 6 4.7170 -1.4348 0.6389 8 6 4.3847 -2.8467 1.1572 9 6 3.1086 -3.4143 0.5336 10 6 1.9176 -2.4425 0.6535 11 1 1.6798 -2.2692 1.7031 12 6 0.7167 -3.0043 -0.0629 13 1 0.5549 -2.7764 -1.1063 14 6 -0.1755 -3.8090 0.6133 15 7 0.0879 -4.1944 1.8428 16 14 -1.7583 -4.3519 -0.2168 17 1 -1.8163 -3.7876 -1.5891 18 1 -2.9211 -3.8656 0.5685 19 1 -1.7956 -5.8347 -0.2898 20 6 2.3559 -1.1504 -0.0005 21 1 2.7285 -1.3492 -1.0054 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8903 -0.5134 24 1 -0.3633 -0.8897 -0.5142 25 1 4.3191 1.5453 0.6014 26 1 4.9333 -1.4711 -0.4289 27 1 5.5725 -1.0308 1.1801 28 1 5.2223 -3.5097 0.9404 29 1 4.2385 -2.8024 2.2365 30 1 2.8498 -4.3545 1.0205 31 1 3.3058 -3.6053 -0.5212 32 1 0.9435 -3.9788 2.2460 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:08 Heat of formation + Delta-G solvation = 34.066272 kcal Electronic energy + Delta-G solvation = -14376.007612 eV Core-core repulsion = 12143.794867 eV Total energy + Delta-G solvation = -2232.212744 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44597 -37.28318 -35.24780 -33.28607 -30.82117 -30.30455 -27.34626 -25.98036 -23.29350 -22.45976 -21.01453 -20.76766 -18.85861 -16.85344 -16.59143 -15.80448 -15.68349 -15.59083 -14.59433 -14.36471 -14.26581 -13.99392 -13.73026 -13.16052 -12.79935 -12.77345 -12.57737 -12.27582 -11.97340 -11.79297 -11.63658 -11.43511 -11.19470 -10.83740 -10.54683 -10.24623 -8.59941 -8.49328 -6.28333 1.33665 1.50601 1.57542 1.73772 2.04641 2.54626 3.18383 3.56432 3.78479 3.94515 4.12253 4.26545 4.36022 4.46742 4.58436 4.69910 4.70302 4.72399 4.79964 4.92491 5.02098 5.14907 5.22300 5.27882 5.29805 5.47965 5.60913 5.85183 6.09482 6.22957 6.61736 6.66633 7.16721 7.48121 8.79408 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.013128 C = 0.010135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.084746 B = 2132.373219 C = 2761.969261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.578 5.578 3 N -0.273 5.273 4 C 0.050 3.950 5 C -0.115 4.115 6 H 0.064 0.936 7 C -0.081 4.081 8 C -0.117 4.117 9 C -0.105 4.105 10 C 0.041 3.959 11 H 0.002 0.998 12 C -0.586 4.586 13 H 0.037 0.963 14 C -0.024 4.024 15 N -0.938 5.938 16 Si 1.105 2.895 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.283 1.283 20 C 0.143 3.857 21 H 0.030 0.970 22 H 0.018 0.982 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.234 0.766 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 6.397 -2.196 10.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.396 5.396 3 N -0.074 5.074 4 C -0.165 4.165 5 C -0.137 4.137 6 H 0.082 0.918 7 C -0.119 4.119 8 C -0.155 4.155 9 C -0.144 4.144 10 C 0.021 3.979 11 H 0.020 0.980 12 C -0.624 4.624 13 H 0.055 0.945 14 C -0.222 4.222 15 N -0.575 5.575 16 Si 0.928 3.072 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.209 1.209 20 C 0.037 3.963 21 H 0.048 0.952 22 H 0.037 0.963 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.250 0.750 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.725 6.259 -2.410 8.818 hybrid contribution 1.449 -0.279 0.241 1.495 sum 7.175 5.980 -2.169 9.589 Atomic orbital electron populations 1.20986 0.75609 1.01922 0.99294 1.50624 1.03157 1.00146 1.85689 1.75457 1.03527 1.15649 1.12754 1.27197 0.97482 0.96764 0.95019 1.21664 0.98192 0.93937 0.99873 0.91776 1.21094 0.95921 0.92985 1.01918 1.21735 0.96828 0.97166 0.99740 1.21775 0.94949 0.98425 0.99235 1.18762 0.93773 0.91019 0.94328 0.97957 1.22068 1.10065 1.32421 0.97824 0.94464 1.26968 1.05592 0.94017 0.95635 1.70840 1.25565 1.46006 1.15134 0.83092 0.72650 0.76453 0.75001 1.19777 1.20495 1.20915 1.21705 0.89195 0.89353 0.96078 0.95241 0.96343 0.91239 0.91255 0.74998 0.91362 0.87816 0.90237 0.93335 0.95218 0.94239 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 6.93 11.08 127.77 1.42 8.35 16 2 N -0.58 -25.30 4.23 -516.91 -2.19 -27.49 16 3 N -0.27 -10.32 12.22 -51.32 -0.63 -10.95 16 4 C 0.05 1.49 12.01 87.92 1.06 2.54 16 5 C -0.12 -3.92 2.36 -11.92 -0.03 -3.95 16 6 H 0.06 2.43 7.70 -2.39 -0.02 2.42 16 7 C -0.08 -2.22 5.86 30.23 0.18 -2.04 16 8 C -0.12 -3.81 5.81 30.92 0.18 -3.63 16 9 C -0.10 -4.57 5.08 30.98 0.16 -4.41 16 10 C 0.04 2.04 1.59 -11.69 -0.02 2.02 16 11 H 0.00 0.12 6.74 -2.39 -0.02 0.11 16 12 C -0.59 -32.11 6.23 25.60 0.16 -31.95 16 13 H 0.04 2.09 7.56 -2.91 -0.02 2.07 16 14 C -0.02 -1.32 5.45 84.65 0.46 -0.86 16 15 N -0.94 -56.54 13.56 21.44 0.29 -56.25 16 16 Si 1.10 50.17 29.91 68.60 2.05 52.22 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 C 0.14 6.25 2.49 45.52 0.11 6.36 16 21 H 0.03 1.37 7.85 -2.39 -0.02 1.35 16 22 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 23 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 24 H 0.07 3.15 6.17 -2.39 -0.01 3.13 16 25 H 0.23 4.16 8.06 -2.91 -0.02 4.14 16 26 H 0.07 1.83 7.96 -2.38 -0.02 1.82 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.26 15.77 6.53 -92.70 -0.61 15.17 16 Total: -1.00 -66.49 254.44 4.45 -62.04 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.25 Total: 8.00 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.67 Total: -27.58 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -2.52 Total: -94.68 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -66.49 4.45 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.109 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds